View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3447-Insertion-12 (Length: 518)

Name: NF3447-Insertion-12
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3447-Insertion-12
NF3447-Insertion-12
[»] chr1 (2 HSPs)
chr1 (7-263)||(3486841-3487087)
chr1 (318-518)||(3486582-3486787)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 7 - 263
Target Start/End: Complemental strand, 3487087 - 3486841
Alignment:
Q  7 acaagcatctacgttgatgtgcgaattgaattgtgattctagggtttttcattgatcgtgaattagggttttctttcttttcaatttttccccaaatcac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3487087 acaagcatctacgttgatgtgcgaattgaattgtgattctagggtttttcattgatcgtgaattagggttttctttcttttcaatttttccccaaatcac 3486988  T
Q  107 aatcacaatcacaatctaaattagaatcacttcttctcagttctctattactttctattatttcttctgttctataaatcagtataaatcagggacactg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||| |||||||||||||    
T  3486987 aatcacaatcacaatctaaattagaatcacttcttctcagttctctattactttctattatttcttctgttc----------tatagatcagggacactg 3486898  T
Q  207 ttttaactacaaaattattctatatttttctataaaaattcagaatataaaaaaaga 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3486897 ttttaactacaaaattattctatatttttctataaaaattcagaatataaaaaaaga 3486841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 318 - 518
Target Start/End: Complemental strand, 3486787 - 3486582
Alignment:
Q  318 ttagtatcactatcatgtaaaagtatcatat------agtatacaatttaatttttctatatccgagaatgatatttaaaatatttttcaatccaatata 411  Q
    |||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  3486787 ttagtatcactatcatgtaaaagtatcatattgatatagtatacaatttaatttttctatatccgagaatgatatttaaaatatttttcaagagaatata 3486688  T
Q  412 gtatattggaaataggtatgatttattatgtcttatttattatttgtgtgttaaattttgaattgaac--gaataattagatttagagtttttctattca 509  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||    
T  3486687 gtatattggaaataggtatgat---ttatgtcttatttattatttgtgtgttaaattttgaattgaacaagaataattagttttagagtttttctattca 3486591  T
Q  510 caccccata 518  Q
    |||||||||    
T  3486590 caccccata 3486582  T

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