View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447-Insertion-13 (Length: 516)
Name: NF3447-Insertion-13
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447-Insertion-13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 8 - 516
Target Start/End: Complemental strand, 46768328 - 46767815
Alignment:
| Q |
8 |
acaaagggttcagtgatcatcatcaagggaaacgtgtgatgacggtggagcaattcaagttatggttgaagacaacatttgacacaaaaaatgatggcaa |
107 |
Q |
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| T |
46768328 |
acaaagggttcagtgatcatcatcaagggaaacgtgtgatgacggtggagcaattcaagttatggttgaagacaacatttgacacaaaaaatgatggcaa |
46768229 |
T |
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| Q |
108 |
aatcagcaaagaggaactgcgacatgctgtgcgccttacaagaggactccttgtctcttggagtatatgtccagacttttacgctgcagacaccaatcat |
207 |
Q |
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| T |
46768228 |
aatcagcaaagaggaactgcgacatgctgtgcgccttacaagaggactccttgtctcttggagtatatgtccagacttttacgctgcagacaccaatcat |
46768129 |
T |
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| Q |
208 |
aacggtttcattgatgacaatgaattcaaaaaccttgtccactttgcagacaagcatttcaatgtcaaaatcaaacagtcctaggtttcgtttcctcgta |
307 |
Q |
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| T |
46768128 |
aacggtttcattgatgacaatgaattcaaaaaccttgtccactttgcagacaagcatttcaatgtcaaaatcaaacagtcctaggtttcgtttcctcgta |
46768029 |
T |
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| Q |
308 |
c--------gtactcttgttggactaatagtatgttagagttttacttgttttagatcactaataactggtaataaagatctcatgcaagtaatttaact |
399 |
Q |
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| T |
46768028 |
cgtacgtacgtactcttgttggactaatagtatgttagagttttacttgttttagatcactaataactggtaataaagatctcatgcaag---tttaact |
46767932 |
T |
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| Q |
400 |
caaaaaatatatctcatgcagcttgcaagtatgcaacgaatatgtggaaaaataaattaacaaaaatatgtgttgtgtgtagnnnnnnngcatgtggaat |
499 |
Q |
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| T |
46767931 |
caaaaaatatatctcatgcagcttgcaactatgcaacgaatatgtggaaaaataaattaacaaaaatatgtgttgtgtgtagtttttttgcatgtggaat |
46767832 |
T |
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| Q |
500 |
actttttgtttgtgcaa |
516 |
Q |
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| T |
46767831 |
actttttgtttgtgcaa |
46767815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 46773108 - 46772812
Alignment:
| Q |
8 |
acaaagggttcagtgatcatcatcaagggaaacgtgtgatgacggtggagcaattcaagttatggttgaagacaacatttgacacaaaaaatgatggcaa |
107 |
Q |
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| T |
46773108 |
acaaagggttcaatggtcatcat---ggaaagcgtgtgatgacggtggagcaattcaaactatggttgaagacagcgtttgacacaaacggtgatggaag |
46773012 |
T |
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| Q |
108 |
aatcagcaaagaggaactgcgacatgctgtgcgccttacaagaggactccttgtctcttggagtatatg-tccagacttttacgctgcagacaccaatca |
206 |
Q |
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| T |
46773011 |
aatgagcaaagaggaactgcgacatgctgtgcgccttgctagaggactctttgcatcttggagt-tgtgatacagacttcaagtttgcagacgccaacca |
46772913 |
T |
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| Q |
207 |
taacggtttcattgatgacaatgaattcaaaaaccttgtccactttgcagacaagcatttcaatgtcaaaatcaaacagtcctaggtttcgtttcctcgt |
306 |
Q |
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| T |
46772912 |
caacggtttcattgatgaaaatgaagtcagaaaccttgtccactttgcagacaagcatttcaatgtcaaaatcacaca---ctaggtttcgttttcttgt |
46772816 |
T |
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