View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3447-Insertion-17 (Length: 453)
Name: NF3447-Insertion-17
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447-Insertion-17 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 7 - 449
Target Start/End: Complemental strand, 10083060 - 10082618
Alignment:
| Q |
7 |
atgatgatcataatacactgaatttcatcactgaggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagcttt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10083060 |
atgatgatcataatacactgaatttcatcactgaggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagcttt |
10082961 |
T |
|
| Q |
107 |
gaagaagtggtctaagcagattttgaaagggttgaattatttgcatgtgcatgatccttgtatcattcatagagacctcaattgcagtaatgttttcgtc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10082960 |
gaagaagtggtctaagcagattttgaaagggttgaattatttgcatgtgcatgatccttgtatcattcatagagacctcaattgcagtaatgtttttgtc |
10082861 |
T |
|
| Q |
207 |
aacggaaacaccggtcaggtaannnnnnnncaaacctttttattttgaagttagtttcaatcacgttcgaatcattcgcccgagctaggaatgtcatgtt |
306 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
10082860 |
aacggaaacaccggtcaggtaattttttttcaaacctttttattttgaagttagtttcaatcacgttcgaatcattcacccgagcaaggaatgtcatgtt |
10082761 |
T |
|
| Q |
307 |
ataaaatttgaattcactttctatgcttcattatctcattttggaaccgtaatagtcgaattacttaactgttttaaagtgaacaactcaatttagaagt |
406 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
10082760 |
ataaaatttgaattcactttctatggttcattatctcattttggaaccgaaatagtcgaattacttaactgttctaaagtgaacaactcaatttagtagt |
10082661 |
T |
|
| Q |
407 |
taaggtaaataatctgaattgttgatgaaaaactcaactgatt |
449 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10082660 |
taaagtaaataatctgaattgttgatgaaaaactcaactgatt |
10082618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 15 - 228
Target Start/End: Complemental strand, 22263850 - 22263637
Alignment:
| Q |
15 |
cataatacactgaatttcatcactgaggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagctttgaagaagt |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
22263850 |
cataacacactgaatttcatcactgaggtttgtacaagtgggaatttgagggagtataggaagaaacataaacatgtttctcttaaggctttgaagaagt |
22263751 |
T |
|
| Q |
115 |
ggtctaagcagattttgaaagggttgaattatttgcatgtgcatgatccttgtatcattcatagagacctcaattgcagtaatgttttcgtcaacggaaa |
214 |
Q |
| |
|
||||||| || || ||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||| |
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|
| T |
22263750 |
ggtctaaacaaatattggaagggttgaattatttgcatgttcatgatccttgtatcatccatagagacctcaattgcagtaatgtgtttgtcaatggaaa |
22263651 |
T |
|
| Q |
215 |
caccggtcaggtaa |
228 |
Q |
| |
|
|| || ||||||| |
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|
| T |
22263650 |
tactggccaggtaa |
22263637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 22269990 - 22270203
Alignment:
| Q |
15 |
cataatacactgaatttcatcactgaggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagctttgaagaagt |
114 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||| |
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|
| T |
22269990 |
cataacacactgaatttcatcactgaggtttgtacaagtgggaatttgagggagtataggaagaaacataaacatgtttctcttaaggctttgaagaagt |
22270089 |
T |
|
| Q |
115 |
ggtctaagcagattttgaaagggttgaattatttgcatgtgcatgatccttgtatcattcatagagacctcaattgcagtaatgttttcgtcaacggaaa |
214 |
Q |
| |
|
||||||| || || ||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||| |
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|
| T |
22270090 |
ggtctaaacaaatattggaagggttgaattatttgcatgttcatgatccttgtatcatccatagagacctcaattgcagtaatgtgtttgtcaatggaaa |
22270189 |
T |
|
| Q |
215 |
caccggtcaggtaa |
228 |
Q |
| |
|
|| || ||||||| |
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|
| T |
22270190 |
tactggccaggtaa |
22270203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 45874427 - 45874206
Alignment:
| Q |
7 |
atgatgatcataatacactgaatttcatcactgaggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagcttt |
106 |
Q |
| |
|
|||| |||||||| | ||| |||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||| || | ||||| |
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|
| T |
45874427 |
atgaagatcataacatacttaatttcatcactgaagtttgtacaagtgggaacttgagagattataggaagaaacataagcatgtttctattaaggcttt |
45874328 |
T |
|
| Q |
107 |
gaagaagtggtctaagcagattttgaaagggttgaattatttgcatgtgcatgatccttgtatcattcatagagacctcaattgcagtaatgttttcgtc |
206 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| || || |
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|
| T |
45874327 |
gaagaagtggtctaagcaaattttggaagggttgaattatttgcatgttcatgatccatgtatcattcatagagatctcaattgcagcaatgtgtttatc |
45874228 |
T |
|
| Q |
207 |
aacggaaacaccggtcaggtaa |
228 |
Q |
| |
|
|| ||||| || || ||||||| |
|
|
| T |
45874227 |
aatggaaatactggccaggtaa |
45874206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 41245805 - 41245633
Alignment:
| Q |
27 |
aatttcatcactgaggtttgtacaagtgggaatttgagggaatataggaagaaacataagcatgtttctcttcaagctttgaagaagtggtctaagcaga |
126 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| ||||||||| | | || |||||||| ||||| | ||||| |
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|
| T |
41245805 |
aatttcatcaccgaggtttgtacaagtgggaatttgagagagtataggaagaaacatagacatgtttctatgaaggcattgaagaaatggtcaaggcaga |
41245706 |
T |
|
| Q |
127 |
ttttgaaagggttgaattatttgcatgtgcatgatccttgtatcattcatagagacctcaattgcagtaatgt |
199 |
Q |
| |
|
|| |||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
41245705 |
ttctgaaagggttgaattatttgcacactcatgagccttgcatcattcatagagatctcaattgcagtaatgt |
41245633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 151
Target Start/End: Complemental strand, 20625852 - 20625818
Alignment:
| Q |
117 |
tctaagcagattttgaaagggttgaattatttgca |
151 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
20625852 |
tctaggcagattttgaaagggttgaattatttgca |
20625818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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