View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447-Insertion-18 (Length: 426)
Name: NF3447-Insertion-18
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447-Insertion-18 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Complemental strand, 40558800 - 40558405
Alignment:
| Q |
8 |
acatcatatttcatttaatttaaaaatgggaagcaatattgtcaatggggcgagacatatgtcacatgtgtgcatcaatagacttaaccaattaaactat |
107 |
Q |
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| T |
40558800 |
acatcatatttcatttaatttaaaaatgggaaacaatattgtcaatggggcgagacatatgtcacctgtgtgcatcaatagacttgaccaattaaactat |
40558701 |
T |
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| Q |
108 |
agcattatgtatacagacccactactcaatatacttgatcctagaattggtaagaataagaactctaacactctattgaactataattcactaatacggg |
207 |
Q |
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| T |
40558700 |
agcattatgtatacaaacccactactcaatatacttgatcctagaattggtaagaataagaactctaacactctattgaactataattcactaatacggg |
40558601 |
T |
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| Q |
208 |
catttaacacgacattgacgagaatggagatcatattgacacttatatgttaaccaattcttattaccatgtcttgcttttatttgtatcatctatatga |
307 |
Q |
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| T |
40558600 |
catttaacacgacattgacgagaatggagatcatatttacacttatatgttaaccaattcttattaccatgtcttgcttttatttgtatcatctatatga |
40558501 |
T |
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| Q |
308 |
agcaacgagggcagtaacatggtcagtgttttatagagatctaaaagataagaacacattttccatctaccaagatttttcaaattactccatggt |
403 |
Q |
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| T |
40558500 |
agcaacgagggcagtaacatggtcagtgttttatagagatctaaaagataagaacacattttccatctaccaagatttttcaaattactccatggt |
40558405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 8865438 - 8865501
Alignment:
| Q |
340 |
atagagatctaaaagataagaacacattttccatctaccaagatttttcaaattactccatggt |
403 |
Q |
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| T |
8865438 |
atagagatctaaaagataacaacacattttacatctactcagatctttctaattactccatggt |
8865501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 332
Target Start/End: Original strand, 8865310 - 8865367
Alignment:
| Q |
275 |
catgtcttgcttttatttgtatcatctatatgaagcaacgagggcagtaacatggtca |
332 |
Q |
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| T |
8865310 |
catgtcctgcttttatttgtggcagctatatgaagcaatgagggcagtaacatggtca |
8865367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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