View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3447-Insertion-2 (Length: 1130)

Name: NF3447-Insertion-2
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3447-Insertion-2
NF3447-Insertion-2
[»] chr2 (7 HSPs)
chr2 (8-154)||(28769410-28769556)
chr2 (497-636)||(28781176-28781315)
chr2 (652-777)||(28781372-28781496)
chr2 (811-895)||(28781570-28781654)
chr2 (56-139)||(28764625-28764708)
chr2 (517-566)||(16601682-16601731)
chr2 (521-574)||(37047832-37047885)
[»] chr3 (4 HSPs)
chr3 (514-566)||(1605424-1605476)
chr3 (414-472)||(4838596-4838654)
chr3 (414-470)||(4836849-4836905)
chr3 (518-566)||(29233208-29233256)
[»] chr5 (2 HSPs)
chr5 (514-566)||(34980525-34980577)
chr5 (515-566)||(34980414-34980465)
[»] chr8 (1 HSPs)
chr8 (514-577)||(33831874-33831937)
[»] chr6 (1 HSPs)
chr6 (514-564)||(3439045-3439095)
[»] chr1 (1 HSPs)
chr1 (512-562)||(39252692-39252741)
[»] chr7 (2 HSPs)
chr7 (515-566)||(18777458-18777508)
chr7 (512-566)||(18777373-18777427)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 5e-65; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 8 - 154
Target Start/End: Original strand, 28769410 - 28769556
Alignment:
Q  8 gaaacaacattaactattttaggaatcattatcaagggccacgactaccgctaacctcatatgttcattacgaacgacctaacccttgaaaatcaattgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |    
T  28769410 gaaacaacattaactattttaggaatcattatcaagggccacggctaccgctaacctcatatgttcaatacggacgacctaacccttgaaaatcaattat 28769509  T
Q  108 ggaaaaaggaaacattcaaatcttaaaattacaaaacgcctcattga 154  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  28769510 ggaaaaaggaaacattcaaatcttaaaattacaaaacgtctcattga 28769556  T

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Target: chr2; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 497 - 636
Target Start/End: Original strand, 28781176 - 28781315
Alignment:
Q  497 caagacttgaagagcaacaagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaatactcttgtggattgtaagacttgatgagg 596  Q
    ||||| ||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||    
T  28781176 caagatttggagatcaacgagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaatatccttgtggactgtaagacttgatgagg 28781275  T
Q  597 aaaaatcaaacacgtgaagcagccgcattgcttctcttgc 636  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  28781276 aaaaatcaaacaagtgaagcagccgcattgcttcttttgc 28781315  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 652 - 777
Target Start/End: Original strand, 28781372 - 28781496
Alignment:
Q  652 atttcttaataaacatgtagcttcagagtaaaataattgggtcagatacaaaattctttaaacaatatcataaggatactctttaacannnnnnnatata 751  Q
    ||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||       |||||    
T  28781372 atttcttgataaacatgtagcttcagtgtaaaataattgagtcagatacaaaattctttaaacaatgtcataaggatact-tttaacatttttttatata 28781470  T
Q  752 attaaacctttctacattaaaattgt 777  Q
    |||||||||||||||| |||||||||    
T  28781471 attaaacctttctacactaaaattgt 28781496  T

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Target: chr2; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 811 - 895
Target Start/End: Original strand, 28781570 - 28781654
Alignment:
Q  811 ttcaataagaaaaatatttgatagacacccaaaagtcgattaatatccttagagagaaggaaatagaaaggatgatgtgataaat 895  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||    
T  28781570 ttcaatgagaaaaatatttgataaacacccaaaagtcgattaatatctttagagagaaggaaattgaaaggatggtgtgataaat 28781654  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 28764625 - 28764708
Alignment:
Q  56 cgctaacctcatatgttcattacgaacgacctaacccttgaaaatcaattgtggaaaaaggaaacattcaaatcttaaaattac 139  Q
    ||||||||||| |||| |||||   |||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  28764625 cgctaacctcacatgtgcattaaagacgacctaacccttgaaaataaattgtgacaaaaggaaacattcaaatcttaaaattac 28764708  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 517 - 566
Target Start/End: Complemental strand, 16601731 - 16601682
Alignment:
Q  517 gaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 566  Q
    |||| ||||||||||||| ||| |||||  ||||||||||||||||||||    
T  16601731 gaaaataaacaagtgaagcaactaccttacttgtcttgcacttcaagaaa 16601682  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 521 - 574
Target Start/End: Original strand, 37047832 - 37047885
Alignment:
Q  521 gtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaatactcttg 574  Q
    |||||||||||||| |||||| ||  ||||||||| |||||||||||| |||||    
T  37047832 gtaaacaagtgaagcaaccactttacttgtcttgcccttcaagaaataatcttg 37047885  T

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Target: chr3 (Bit Score: 45; Significance: 5e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 514 - 566
Target Start/End: Original strand, 1605424 - 1605476
Alignment:
Q  514 caagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 566  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  1605424 caagaaagtaaccaagtgaaggaaccaccttgcttgtcttgcacttcaagaaa 1605476  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 414 - 472
Target Start/End: Complemental strand, 4838654 - 4838596
Alignment:
Q  414 attaactagagcaagcaaccatagcaagattttggtagctaatatgatattttcttgta 472  Q
    ||||||||||||||   ||| |||| |||||||||||||||||||||||||||||||||    
T  4838654 attaactagagcaatagaccgtagctagattttggtagctaatatgatattttcttgta 4838596  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 414 - 470
Target Start/End: Complemental strand, 4836905 - 4836849
Alignment:
Q  414 attaactagagcaagcaaccatagcaagattttggtagctaatatgatattttcttg 470  Q
    ||||||||||||||   ||| |||| |||||||||||||||||||||||||||||||    
T  4836905 attaactagagcaatagaccgtagctagattttggtagctaatatgatattttcttg 4836849  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 518 - 566
Target Start/End: Original strand, 29233208 - 29233256
Alignment:
Q  518 aaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 566  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||||||    
T  29233208 aaagtaaataagtgatggaaccaccttggttgtcttgcacttcaagaaa 29233256  T

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Target: chr5 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 514 - 566
Target Start/End: Complemental strand, 34980577 - 34980525
Alignment:
Q  514 caagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 566  Q
    |||||||||||||||||||||||| ||||||| |||||||| |||||||||||    
T  34980577 caagaaagtaaacaagtgaaggaatcaccttgcttgtcttggacttcaagaaa 34980525  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 515 - 566
Target Start/End: Original strand, 34980414 - 34980465
Alignment:
Q  515 aagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 566  Q
    |||||||||||||| |||||||| ||||||| ||| ||||||||||||||||    
T  34980414 aagaaagtaaacaactgaaggaatcaccttgcttgccttgcacttcaagaaa 34980465  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 514 - 577
Target Start/End: Complemental strand, 33831937 - 33831874
Alignment:
Q  514 caagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaatactcttgtgg 577  Q
    ||||||||||||||||||||| ||| |||||| |||| |||||||||||||||||  |||||||    
T  33831937 caagaaagtaaacaagtgaagcaacaaccttgcttgtgttgcacttcaagaaataaccttgtgg 33831874  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 514 - 564
Target Start/End: Complemental strand, 3439095 - 3439045
Alignment:
Q  514 caagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaaga 564  Q
    ||||||| ||||||||||||| |||||||||| || |||||||||||||||    
T  3439095 caagaaaataaacaagtgaagcaaccaccttgcttatcttgcacttcaaga 3439045  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 512 - 562
Target Start/End: Original strand, 39252692 - 39252741
Alignment:
Q  512 aacaagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaa 562  Q
    ||||||||||||||||||||||||||||||| || |||||||| |||||||    
T  39252692 aacaagaaagtaaacaagtgaaggaaccacc-tgcttgtcttgaacttcaa 39252741  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 515 - 566
Target Start/End: Original strand, 18777458 - 18777508
Alignment:
Q  515 aagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 566  Q
    |||||||||||||||||||||||||||| |  |||||| |||||||||||||    
T  18777458 aagaaagtaaacaagtgaaggaaccaccat-cttgtctcgcacttcaagaaa 18777508  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 512 - 566
Target Start/End: Original strand, 18777373 - 18777427
Alignment:
Q  512 aacaagaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 566  Q
    |||||||||||||| || |||||||||||  ||| |||||||| |||||||||||    
T  18777373 aacaagaaagtaaagaattgaaggaaccatattgcttgtcttgaacttcaagaaa 18777427  T

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