View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3447-Insertion-20 (Length: 409)

Name: NF3447-Insertion-20
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3447-Insertion-20
NF3447-Insertion-20
[»] chr4 (1 HSPs)
chr4 (8-409)||(46687229-46687630)


Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 8 - 409
Target Start/End: Complemental strand, 46687630 - 46687229
Alignment:
Q  8 atatctccctatgatcgccgttaccggtaattccttctccgtttattcttctttcaacgttcttggtaatcttatctgagacgcgtcagacagtaaatat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||    
T  46687630 atatctccctatgatcgccgttaccggtaattccttctccgtttattcttctttcaacgttcttgataatcttatttgaaacgtgtcagacagtaaatat 46687531  T
Q  108 atgattaaccaattcttggttggaggtgccaacgcttgttgactgttctcttctttcttaagatttcactttgtttttaagaaacacaataaatgatatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46687530 atgattaaccaattcttggttggaggtgccaacgcttgttgactgttctcttctttcttaagatttcactttgtttttaagaaacacaataaatgatatt 46687431  T
Q  208 aacgtttataattagtctttattagtcttgattagtcttcaaattttccagtatttcacattannnnnnnnnnnnnnnnncctttcttgtgacagagttg 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||    
T  46687430 aacgtttataattagtctttattagtcttgattagtcttcaaattttccagtatttcacattattttttttattttttttcctttcttgtgacagagttg 46687331  T
Q  308 aaagacatgacattgatttttctgttgctttgtttctgacggaaaattgttagctgttaatgtttcacttctttcattttctgtttgtatttgatgttat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46687330 aaagacatgacattgatttttctgttgctttgtttctgacggaaaattgttagctgttaatgtttcacttctttcattttctgtttgtatttgatgttat 46687231  T
Q  408 ta 409  Q
    ||    
T  46687230 ta 46687229  T

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