View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447-Insertion-21 (Length: 328)
Name: NF3447-Insertion-21
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447-Insertion-21 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 49125906 - 49125587
Alignment:
| Q |
8 |
atttaaaccaaatcattgccttgttttctacaagtaacagaaaatgtaataaatgtggcaacaagtacacatttcaaaggaagcagatgatgtgaactta |
107 |
Q |
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| T |
49125906 |
atttaaaccaaatcattgccttgttttctacgggtaacagaaaatgtaataaatgtggcaacaagtacaaatttcaaaggaagcagatgatgtgaactta |
49125807 |
T |
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| Q |
108 |
cacaattgaaaatatggggagctccaggtcctgcatattgaattgaaattgaaataaagaacatgtccaacctttatttaaatattaaaatgtagtaaat |
207 |
Q |
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| T |
49125806 |
cacaattgaaaatatggggagctccaggtcctgcatattgaattgaaattgaaataaagaacatgtccaacc-ttatttaaatattaaaatgtagtaaat |
49125708 |
T |
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| Q |
208 |
agaatgcaagatggtaccaatttcaagatcatgccaagggtgtgcagcaactgatctccttgacaaagatgaaagaatcctttcattcaaacggggtact |
307 |
Q |
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| T |
49125707 |
agaatgcaagatggtaccaatttcaagatcatgccaagggtgtgcagcaactgatctccttgacaaagatgaaagaatcctttcattcaaacggggtact |
49125608 |
T |
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| Q |
308 |
ggacggtgaatttcttgaaca |
328 |
Q |
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| T |
49125607 |
ggacggtgaatttcttgaaca |
49125587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 8800659 - 8800740
Alignment:
| Q |
222 |
taccaatttcaagatcatgccaagggtgtgcagcaactgatctccttgacaaagatgaaagaatcctttcattcaaacgggg |
303 |
Q |
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| T |
8800659 |
taccaatttcaagatcatgccaagggtgagcagcaactgatcttcttgacaaagatgaaagaatcctttcattcaaacgggg |
8800740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 43547158 - 43547094
Alignment:
| Q |
230 |
tcaagatcatgccaagggtgtgcagcaactgatctccttgacaaagatgaaagaatcctttcatt |
294 |
Q |
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| T |
43547158 |
tcaagatcatgccaagggtgtgcagcaacggatctccttgccaaggatgaaacaatcctctcatt |
43547094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 29367108 - 29367042
Alignment:
| Q |
230 |
tcaagatcatgccaagggtgtgcagcaactgatctccttgacaaagatgaaagaatcctttcattca |
296 |
Q |
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| T |
29367108 |
tcaagatcatgccatgggtgtgcagcaacagacctcctagtcaatgatgaaaggatcctctcattca |
29367042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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