View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3447-Insertion-22 (Length: 325)

Name: NF3447-Insertion-22
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3447-Insertion-22
NF3447-Insertion-22
[»] chr8 (4 HSPs)
chr8 (7-325)||(36361850-36362163)
chr8 (277-325)||(2188871-2188919)
chr8 (125-161)||(2364021-2364057)
chr8 (125-161)||(4473613-4473649)
[»] chr2 (2 HSPs)
chr2 (277-325)||(36614523-36614571)
chr2 (277-325)||(36648184-36648232)
[»] chr3 (4 HSPs)
chr3 (277-325)||(3068021-3068069)
chr3 (192-259)||(7615675-7615742)
chr3 (125-158)||(39473917-39473950)
chr3 (125-157)||(35615114-35615146)
[»] chr4 (1 HSPs)
chr4 (125-160)||(30129029-30129064)
[»] chr1 (1 HSPs)
chr1 (125-163)||(44465435-44465473)
[»] chr7 (2 HSPs)
chr7 (125-161)||(33296032-33296068)
chr7 (125-161)||(40991557-40991593)
[»] chr5 (1 HSPs)
chr5 (125-161)||(32208081-32208117)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 325
Target Start/End: Complemental strand, 36362163 - 36361850
Alignment:
Q  7 aacaacttagagtaagtttcttactcagctttttcttttaccacttcaatttcatcatattcattcactgttagtcttgtaacatcaagacactgagttt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36362163 aacaacttagagtaagtttcttactcagctttttcttttaccacttcaatttcatcatattcattcactgttagtcttgtaacatcaagacactgagttt 36362064  T
Q  107 aaattctccgttgtaaattaaaatgaccattagtgtcactttaattaataaaaaattcgcatttgtatttgtgattcagactctttataacaacggagca 206  Q
    |||||||||||||||||     ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36362063 aaattctccgttgtaaa-----atgaccattagtgtcactttaattattaaaaaattcgcgtttgtatttgtgattcagactctttataacaacggagca 36361969  T
Q  207 agaaaaatggtactatttgggattggtcaaataggctgcagcccaaatgaattggctacaaggagcgcggatggcgtaacatgtgtggaagaaatcaatt 306  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36361968 aggaaaatggtactatttgggattggtcaaataggctgcagcccaaatgaattggctacaaggagcgcagatggcgtaacatgtgtggaagaaatcaatt 36361869  T
Q  307 cagcaaaccaaatattcaa 325  Q
    |||||||||||||||||||    
T  36361868 cagcaaaccaaatattcaa 36361850  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 2188919 - 2188871
Alignment:
Q  277 atggcgtaacatgtgtggaagaaatcaattcagcaaaccaaatattcaa 325  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  2188919 atggcataacatgtgtgcaagaaatcaattcagcaaaccaaatattcaa 2188871  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 2364057 - 2364021
Alignment:
Q  125 taaaatgaccattagtgtcactttaattaataaaaaa 161  Q
    |||||||| ||||||||||||||||||||||||||||    
T  2364057 taaaatgatcattagtgtcactttaattaataaaaaa 2364021  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Complemental strand, 4473649 - 4473613
Alignment:
Q  125 taaaatgaccattagtgtcactttaattaataaaaaa 161  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  4473649 taaaatgatcattactgtcactttaattaataaaaaa 4473613  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 36614523 - 36614571
Alignment:
Q  277 atggcgtaacatgtgtggaagaaatcaattcagcaaaccaaatattcaa 325  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  36614523 atggcataacatgtgtgcaagaaatcaattcagcaaaccaaatattcaa 36614571  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 277 - 325
Target Start/End: Original strand, 36648184 - 36648232
Alignment:
Q  277 atggcgtaacatgtgtggaagaaatcaattcagcaaaccaaatattcaa 325  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  36648184 atggcataacatgtgtgcaagaaatcaattcagcaaaccaaatattcaa 36648232  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 3068069 - 3068021
Alignment:
Q  277 atggcgtaacatgtgtggaagaaatcaattcagcaaaccaaatattcaa 325  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||||||    
T  3068069 atggcataacatgtgtgcaagaaatcaattcaacaaaccaaatattcaa 3068021  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 7615675 - 7615742
Alignment:
Q  192 tataacaacggagcaagaaaaatggtactatttgggattggtcaaataggctgcagcccaaatgaatt 259  Q
    |||||| | |||||||| |||||||   |||||||||||||||||||||| ||||| |||||||||||    
T  7615675 tataactatggagcaaggaaaatggctttatttgggattggtcaaataggttgcagtccaaatgaatt 7615742  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Complemental strand, 39473950 - 39473917
Alignment:
Q  125 taaaatgaccattagtgtcactttaattaataaa 158  Q
    |||||||||||||||| |||||||||||||||||    
T  39473950 taaaatgaccattagtatcactttaattaataaa 39473917  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 35615114 - 35615146
Alignment:
Q  125 taaaatgaccattagtgtcactttaattaataa 157  Q
    ||||||||||||||||| |||||||||||||||    
T  35615114 taaaatgaccattagtgccactttaattaataa 35615146  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 160
Target Start/End: Original strand, 30129029 - 30129064
Alignment:
Q  125 taaaatgaccattagtgtcactttaattaataaaaa 160  Q
    |||||||||||||||||||||||||||| |||||||    
T  30129029 taaaatgaccattagtgtcactttaattgataaaaa 30129064  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 44465473 - 44465435
Alignment:
Q  125 taaaatgaccattagtgtcactttaattaataaaaaatt 163  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  44465473 taaaatgatcattagtgtcactttaactaataaaaaatt 44465435  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 33296032 - 33296068
Alignment:
Q  125 taaaatgaccattagtgtcactttaattaataaaaaa 161  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  33296032 taaaatgacaattattgtcactttaattaataaaaaa 33296068  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 40991557 - 40991593
Alignment:
Q  125 taaaatgaccattagtgtcactttaattaataaaaaa 161  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  40991557 taaaatgactattagtgtcactttaatcaataaaaaa 40991593  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 32208081 - 32208117
Alignment:
Q  125 taaaatgaccattagtgtcactttaattaataaaaaa 161  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  32208081 taaaatgaccatcagtgtaactttaattaataaaaaa 32208117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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