View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447-Insertion-23 (Length: 310)
Name: NF3447-Insertion-23
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447-Insertion-23 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 310
Target Start/End: Complemental strand, 3530687 - 3530393
Alignment:
| Q |
8 |
aagtgaaggtatcaaatgattgcaagagcaagcaaagtttttggaaaactttatcagcaactaatcttcatttgggtactttggatgaacaaggacaaaa |
107 |
Q |
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| T |
3530687 |
aagtgaaggtatcaaatgattgcaagagcaagcaaagtttttggaaaacattatcagcaactaatcttcatttgggtactttggatgaacaaggacaaaa |
3530588 |
T |
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| Q |
108 |
tttaagcttgcaaagggaatcaacaacttcccctaagattgtcacaaaaagatgcatatgtattgatgataatcctgcttgtttggacgatccacaaagt |
207 |
Q |
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| T |
3530587 |
tttatgcttgcaaagggaatcaacaacttcccctaagattgtcacaaaaaaatgcatatgtattgatgacaatcctgcttgtttggacgatccacaaagt |
3530488 |
T |
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| Q |
208 |
cagtggtttcaactagttacaacaaatgtgtaacgtaactgtattannnnnnnnnngttatttgaataatacaaatgtataactgttttaactactatgt |
307 |
Q |
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| T |
3530487 |
cagtggtttcaactagttacaacaaatgtg-----taactgtttt---ttttttttgttatttgaataatacaaatgtataactgttttaactactatgt |
3530396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 3526653 - 3526420
Alignment:
| Q |
8 |
aagtgaaggtatcaaatgattgcaagagcaagcaaagtttttggaaaactttatcagcaactaatcttcatttgggtactttggatgaacaaggacaaaa |
107 |
Q |
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| T |
3526653 |
aagtgaaggtatcaaatgattgcaagagcaagcaaagtttttggaaaacattatcagcaactaatcttcatttgggtactttggatgaacaaggacaaaa |
3526554 |
T |
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| Q |
108 |
tttaagcttgcaaagggaatcaacaacttcccctaagattgtcacaaaaagatgcatatgtattgatgataatcctgcttgtttggacgatccacaaagt |
207 |
Q |
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| T |
3526553 |
attatgcttgcaaagggaatcaccaacttcacctaagattgtcacaaaaagatgcatatgtattgatgataatcctgcttgtttggaggatccacaaagt |
3526454 |
T |
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| Q |
208 |
cagtggtttcaactagttacaacaaatgtgtaac |
241 |
Q |
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| T |
3526453 |
cagtggtttcaattagttacaacaaatgtgtaac |
3526420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 3554194 - 3553972
Alignment:
| Q |
19 |
tcaaatgattgcaagagcaagcaaagtttttggaaaactttatcagcaactaatcttcatttgggtactttggatgaacaaggacaaaatttaagcttgc |
118 |
Q |
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| T |
3554194 |
tcaaatgattgtaggagcaagcaaagtttttggaaaactttatcagcaaccaatcttcatttgggtaccttggatagtcaaggacaaaatttatgcttgc |
3554095 |
T |
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| Q |
119 |
aaagggaatcaacaacttcccctaagattgtcacaaaaagatgcatatgtattgatgataatcctgcttgtttggacgatccacaaagtcagtggtttca |
218 |
Q |
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| T |
3554094 |
aaaggaaatctcccacttcacctaaaatagttacaaaaaaatgcatatgcattgatgataatcctgcttgtttggaggatcctcaaagtcaatggtttca |
3553995 |
T |
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| Q |
219 |
actagttacaacaaatgtgtaac |
241 |
Q |
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| T |
3553994 |
actagttacaacaaacgtgtaac |
3553972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 3547990 - 3547935
Alignment:
| Q |
7 |
aaagtgaaggtatcaaatgattgcaagagcaagcaaagtttttggaaaactttatc |
62 |
Q |
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| T |
3547990 |
aaagtgaagctctcaaaagattgcaaaagcaagcaaagtttttggaaaacattatc |
3547935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 3547910 - 3547878
Alignment:
| Q |
205 |
agtcagtggtttcaactagttacaacaaatgtg |
237 |
Q |
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| T |
3547910 |
agtcagtggtttcaactagttaccacaaatgtg |
3547878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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