View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3447-Insertion-25 (Length: 240)

Name: NF3447-Insertion-25
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3447-Insertion-25
NF3447-Insertion-25
[»] chr8 (8 HSPs)
chr8 (8-240)||(37269875-37270118)
chr8 (8-240)||(42941049-42941293)
chr8 (83-228)||(8273657-8273802)
chr8 (8-84)||(36404096-36404172)
chr8 (104-170)||(30503128-30503194)
chr8 (8-69)||(9936388-9936449)
chr8 (100-164)||(37484897-37484961)
chr8 (12-52)||(8273845-8273885)
[»] scaffold0760 (2 HSPs)
scaffold0760 (8-91)||(1754-1837)
scaffold0760 (86-117)||(1844-1875)
[»] chr5 (3 HSPs)
chr5 (80-237)||(36988841-36988998)
chr5 (107-161)||(27408249-27408303)
chr5 (202-230)||(28347394-28347422)
[»] chr2 (5 HSPs)
chr2 (82-237)||(13016971-13017126)
chr2 (80-237)||(11272343-11272499)
chr2 (98-164)||(15316538-15316604)
chr2 (8-53)||(1479477-1479522)
chr2 (8-44)||(33858686-33858722)
[»] chr4 (8 HSPs)
chr4 (100-166)||(4913489-4913555)
chr4 (100-166)||(43441456-43441522)
chr4 (100-166)||(22904700-22904766)
chr4 (100-166)||(22956368-22956434)
chr4 (100-139)||(20672267-20672306)
chr4 (11-69)||(16989598-16989656)
chr4 (100-137)||(1466483-1466520)
chr4 (98-146)||(44645676-44645724)
[»] chr1 (4 HSPs)
chr1 (8-91)||(46594895-46594978)
chr1 (107-161)||(24722577-24722631)
chr1 (8-69)||(32774159-32774220)
chr1 (157-237)||(32774296-32774376)
[»] chr6 (7 HSPs)
chr6 (92-222)||(1034126-1034256)
chr6 (11-69)||(2920971-2921029)
chr6 (12-54)||(10232769-10232811)
chr6 (8-69)||(1034291-1034352)
chr6 (80-170)||(2921052-2921142)
chr6 (11-69)||(18246581-18246639)
chr6 (9-54)||(32548918-32548962)
[»] chr3 (5 HSPs)
chr3 (101-177)||(51042153-51042229)
chr3 (8-54)||(53553682-53553728)
chr3 (99-138)||(28517127-28517166)
chr3 (11-69)||(1259328-1259386)
chr3 (11-69)||(37242616-37242674)
[»] scaffold0495 (1 HSPs)
scaffold0495 (12-54)||(9492-9534)
[»] chr7 (2 HSPs)
chr7 (8-69)||(31234777-31234838)
chr7 (107-159)||(21245336-21245388)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 37269875 - 37270118
Alignment:
Q  8 caagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagataaaactttgatttcctccaca------------tcct 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||            ||||    
T  37269875 caagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagatataactttgatttcctccacaatctcatccacatcct 37269974  T
Q  96 tcgcttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatccaaaccccttttttgagtcttttggaact 195  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37269975 tcgcttgattcttaaaaatcctcgcatttctt-ccttccaaatcgtccaaattgttgcatgccaaatcatccaaaccccttttttgagtcttttggaact 37270073  T
Q  196 cacctcactattccaacaatcaaattgcacaaacaggttatgcgg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37270074 cacctcactattccaacaatcaaattgcacaaacaggttatgcgg 37270118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 42941293 - 42941049
Alignment:
Q  8 caagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagataaaactttgatttcctccaca------------tcct 95  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||            ||||    
T  42941293 caagtccactcataaaagaggaaggaagctatctttagtctactcaacaccccaaaccaagataaaactttgatttcctccacaatctcatccacatcct 42941194  T
Q  96 tcgcttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatccaaaccccttttttgagtcttttggaact 195  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42941193 tcgcttgattcttaaaaatcctcgcatttttttccttccaaatcgtccaaattgttgcatgtcaaatcatccaaaccccttttttgagtcttttggaact 42941094  T
Q  196 cacctcactattccaacaatcaaattgcacaaacaggttatgcgg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  42941093 cacctcactattccaacaatcaaattgcacaaacaggttatgcgg 42941049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 83 - 228
Target Start/End: Complemental strand, 8273802 - 8273657
Alignment:
Q  83 tcctccacatccttcgcttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatccaaaccccttttttga 182  Q
    |||||||| || |||  |||||| ||||||||||| |||||||||||||||||||| | ||||||||| ||||||||||||| ||||| ||| ||||| |    
T  8273802 tcctccacttctttcatttgattgttaaaaatccttgcatttctttccttccaaatcgaccaaattgtcgcatgccaaatcaaccaaaacccctttttaa 8273703  T
Q  183 gtcttttggaactcacctcactattccaacaatcaaattgcacaaa 228  Q
    | ||||||||    |||||||||||||||||| | || ||||||||    
T  8273702 gccttttggagggaacctcactattccaacaacccaaatgcacaaa 8273657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 36404096 - 36404172
Alignment:
Q  8 caagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagataaaactttgatttc 84  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||    
T  36404096 caagtccactcgtagaagaggaaggaagctatcttaagtctactcaacgcccaaaaccaagataccactttgatttc 36404172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 30503128 - 30503194
Alignment:
Q  104 ttcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatccaaa 170  Q
    |||||||| ||||||||||| ||||||||||||||  ||||||| |||||||| ||||||| |||||    
T  30503128 ttcttaaagatcctcgcattcctttccttccaaatcatccaaatagttgcatgtcaaatcaaccaaa 30503194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 9936449 - 9936388
Alignment:
Q  8 caagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga 69  Q
    ||||||||||||||||||||||| || |||||||| ||||| ||||||| ||| | ||||||    
T  9936449 caagtccactcataaaagaggaacgatgctatctttagtctgctcaacatccacacccaaga 9936388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 37484897 - 37484961
Alignment:
Q  100 ttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatca 164  Q
    |||||| ||||||||||| ||||| |||||||||||||||| |||||| |   ||||||||||||    
T  37484897 ttgattattaaaaatcctagcattcctttccttccaaattgaccaaatcgccacatgccaaatca 37484961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 8273885 - 8273845
Alignment:
Q  12 tccactcataaaagaggaaggaagctatcttaagtctactc 52  Q
    ||||||||||||||||||| ||||||||||| | |||||||    
T  8273885 tccactcataaaagaggaaagaagctatctttaatctactc 8273845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 1754 - 1837
Alignment:
Q  8 caagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagataaaactttgatttcctccaca 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1754 caagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagatataactttgatttcctccaca 1837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 117
Target Start/End: Original strand, 1844 - 1875
Alignment:
Q  86 tccacatccttcgcttgattcttaaaaatcct 117  Q
    ||||||||||||||||||||||||||||||||    
T  1844 tccacatccttcgcttgattcttaaaaatcct 1875  T

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Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 80 - 237
Target Start/End: Complemental strand, 36988998 - 36988841
Alignment:
Q  80 atttcctccacatccttcgcttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatccaaaccccttttt 179  Q
    ||||||||||||| ||||  | |||| ||||||||||||||||||||||||||||||||   |||||| || ||||||||||||| ||||| |||||| |    
T  36988998 atttcctccacattcttccttagattattaaaaatcctcgcatttctttccttccaaatcaaccaaatagtagcatgccaaatcaaccaaaaccctttat 36988899  T
Q  180 tgagtcttttggaactcacctcactattccaacaatcaaattgcacaaacaggttatg 237  Q
    | || || || |   |||| |||||||||||||||||||| || ||||| ||||||||    
T  36988898 taagcctcttcggcatcacttcactattccaacaatcaaaatggacaaaaaggttatg 36988841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 27408249 - 27408303
Alignment:
Q  107 ttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaa 161  Q
    ||||||||||||| ||||||||||||||||||  ||||||| || ||||||||||    
T  27408249 ttaaaaatcctcgaatttctttccttccaaatcatccaaatagtggcatgccaaa 27408303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 28347394 - 28347422
Alignment:
Q  202 actattccaacaatcaaattgcacaaaca 230  Q
    |||||||||||||||||||||||||||||    
T  28347394 actattccaacaatcaaattgcacaaaca 28347422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 82 - 237
Target Start/End: Original strand, 13016971 - 13017126
Alignment:
Q  82 ttcctccacatccttcgcttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatccaaaccccttttttg 181  Q
    |||||| || |||||| |||  |||||||||||||| |||||||||||| ||||||| | ||||||||| ||||||||||||| |||||  ||||| ||     
T  13016971 ttcctctacttccttcactttgttcttaaaaatcctagcatttctttccatccaaatcgaccaaattgtcgcatgccaaatcaaccaaaaacctttctta 13017070  T
Q  182 agtcttttggaactcacctcactattccaacaatcaaattgcacaaacaggttatg 237  Q
     | ||||| ||   ||| |||||||||||||| ||||||||  |||||| ||||||    
T  13017071 tgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatg 13017126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 237
Target Start/End: Complemental strand, 11272499 - 11272343
Alignment:
Q  80 atttcctccacatccttcgcttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatccaaaccccttttt 179  Q
    ||||||||||| |||||   |||||| || |||||||| ||||||||||| ||| ||||   ||||||||||||||||||||||| ||||| ||| || |    
T  11272499 atttcctccacttcctttctttgattattgaaaatccttgcatttctttctttc-aaatcaaccaaattgttgcatgccaaatcaaccaaaaccccttct 11272401  T
Q  180 tgagtcttttggaactcacctcactattccaacaatcaaattgcacaaacaggttatg 237  Q
    | ||| | || ||  | || ||| |||||||||| |||||||||||||| | ||||||    
T  11272400 taagtatcttagatttaacttcattattccaacattcaaattgcacaaataagttatg 11272343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 15316604 - 15316538
Alignment:
Q  98 gcttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatca 164  Q
    ||||||||  |||||||||||||||| |||||| |||||||  |||||||||  || ||||||||||    
T  15316604 gcttgatttgtaaaaatcctcgcattcctttccctccaaatcatccaaattgccgcgtgccaaatca 15316538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 1479477 - 1479522
Alignment:
Q  8 caagtccactcataaaagaggaaggaagctatcttaagtctactca 53  Q
    ||||||||||||||||||||||| || |||||||| | ||||||||    
T  1479477 caagtccactcataaaagaggaacgatgctatctttaatctactca 1479522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 33858686 - 33858722
Alignment:
Q  8 caagtccactcataaaagaggaaggaagctatcttaa 44  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  33858686 caagtccactcatataagaggaaggaagctttcttaa 33858722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 4913489 - 4913555
Alignment:
Q  100 ttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatc 166  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||  |||||||||||||||    
T  4913489 ttgattcttaaaaatcctcgcatttctttccttccaaatcatccaaattgaggcatgccaaatcatc 4913555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 43441456 - 43441522
Alignment:
Q  100 ttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatc 166  Q
    ||||||||||||||||||||| |||||||||||||||||  |||||||||  |||||||||||||||    
T  43441456 ttgattcttaaaaatcctcgcgtttctttccttccaaatcatccaaattgaggcatgccaaatcatc 43441522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 22904700 - 22904766
Alignment:
Q  100 ttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatc 166  Q
    ||||||||||||||||||||| ||||||||| |||||||  ||||||| |  ||||| |||||||||    
T  22904700 ttgattcttaaaaatcctcgcgtttctttccatccaaatcatccaaatagaggcatgtcaaatcatc 22904766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 22956368 - 22956434
Alignment:
Q  100 ttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatc 166  Q
    ||||||||||||||||||||| ||||||||| |||||||  ||||||| |  ||||| |||||||||    
T  22956368 ttgattcttaaaaatcctcgcgtttctttccatccaaatcatccaaatagaggcatgtcaaatcatc 22956434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 20672306 - 20672267
Alignment:
Q  100 ttgattcttaaaaatcctcgcatttctttccttccaaatt 139  Q
    ||||||||||||||||||||| ||||||||| ||||||||    
T  20672306 ttgattcttaaaaatcctcgcgtttctttccctccaaatt 20672267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 16989656 - 16989598
Alignment:
Q  11 gtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga 69  Q
    ||||||||||| |||||||| ||||||||||| |  |||||||||| ||||| ||||||    
T  16989656 gtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaaga 16989598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 1466483 - 1466520
Alignment:
Q  100 ttgattcttaaaaatcctcgcatttctttccttccaaa 137  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  1466483 ttgatccttaaaaatcctcgcgtttctttccttccaaa 1466520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 44645724 - 44645676
Alignment:
Q  98 gcttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaa 146  Q
    |||||||| ||||||||||| ||||| ||||| |||||||||| |||||    
T  44645724 gcttgatttttaaaaatcctagcattcctttctttccaaattgaccaaa 44645676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 46594895 - 46594978
Alignment:
Q  8 caagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaagataaaactttgatttcctccaca 91  Q
    ||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||| |  ||||| ||||| ||||||    
T  46594895 caagtccactcgtaaaagagaaaggaagctatgttaagtctactcaatacccaaaaccaagacaccactttaatttcatccaca 46594978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 24722631 - 24722577
Alignment:
Q  107 ttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaa 161  Q
    ||||||||||||| ||||||||||||||||||  ||||||| || ||||||||||    
T  24722631 ttaaaaatcctcgaatttctttccttccaaatcatccaaatagtggcatgccaaa 24722577  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 32774159 - 32774220
Alignment:
Q  8 caagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga 69  Q
    ||||||||||||||||||||||| || |||||||| | ||||||||||  ||||| ||||||    
T  32774159 caagtccactcataaaagaggaatgaggctatctttaatctactcaacgtccaaacccaaga 32774220  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 32774296 - 32774376
Alignment:
Q  157 ccaaatcatccaaaccccttttttgagtcttttggaactcacctcactattccaacaatcaaattgcacaaacaggttatg 237  Q
    |||||||| ||||| ||| || || ||||| |||||| | || || |||||||||||||| ||||||| ||||| ||||||    
T  32774296 ccaaatcaaccaaagccccttctttagtctcttggaaattacttctctattccaacaatcgaattgcataaacaagttatg 32774376  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 1034256 - 1034126
Alignment:
Q  92 tccttcgcttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatccaaaccccttttttgagtcttttgg 191  Q
    ||||||||||  || ||||||||||| ||||||||||||||||||||   ||||||||| || |||||||||| |||||  ||||| ||  |||| || |    
T  1034256 tccttcgctttgttattaaaaatccttgcatttctttccttccaaatcaaccaaattgtcgcgtgccaaatcaaccaaaaacctttcttatgtctcttag 1034157  T
Q  192 aactcacctcactattccaacaatcaaattg 222  Q
    ||  ||||||| || ||||||| ||||||||    
T  1034156 aaaccacctcattactccaacattcaaattg 1034126  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 2920971 - 2921029
Alignment:
Q  11 gtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga 69  Q
    |||||||||||||||||||| ||||||||||| |  |||||||||| ||||| ||||||    
T  2920971 gtccactcataaaagaggaaagaagctatctttaacctactcaacatccaaacccaaga 2921029  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 10232811 - 10232769
Alignment:
Q  12 tccactcataaaagaggaaggaagctatcttaagtctactcaa 54  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  10232811 tccactcataaaagaggaaagaagctatcttcagtctactcaa 10232769  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 1034352 - 1034291
Alignment:
Q  8 caagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga 69  Q
    ||||||||||||||||||||||| || |||||||| | ||||||||||  ||||| ||||||    
T  1034352 caagtccactcataaaagaggaacgatgctatctttaatctactcaacgtccaaacccaaga 1034291  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 2921052 - 2921142
Alignment:
Q  80 atttcctccacatccttcgcttgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatccaaa 170  Q
    ||||||||||||||||||  ||| || || || ||||| || ||||||||||||||||| | |||||| || |  |||||||||| |||||    
T  2921052 atttcctccacatccttcctttggttattgaagatccttgcgtttctttccttccaaatcgaccaaatagtagtgtgccaaatcaaccaaa 2921142  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 18246581 - 18246639
Alignment:
Q  11 gtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga 69  Q
    ||||||||||| |||||||| ||||||||||| |  |||||||||| ||||| ||||||    
T  18246581 gtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaaga 18246639  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 32548962 - 32548918
Alignment:
Q  9 aagtccactcataaaagaggaaggaagctatcttaagtctactcaa 54  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  32548962 aagtccacttataaaagagaaag-aagctatcttaagtctactcaa 32548918  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 51042229 - 51042153
Alignment:
Q  101 tgattcttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgccaaatcatccaaaccccttt 177  Q
    ||||| ||||| ||||| ||||||||||||||||||||  ||||||||| ||| |||||||||| ||| | ||||||    
T  51042229 tgattattaaagatccttgcatttctttccttccaaatcatccaaattgatgcgtgccaaatcaaccacaacccttt 51042153  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 53553682 - 53553728
Alignment:
Q  8 caagtccactcataaaagaggaaggaagctatcttaagtctactcaa 54  Q
    ||||||||||||||||||||||| ||||||||||| | |||||||||    
T  53553682 caagtccactcataaaagaggaaagaagctatctttaatctactcaa 53553728  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 28517127 - 28517166
Alignment:
Q  99 cttgattcttaaaaatcctcgcatttctttccttccaaat 138  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  28517127 cttgattcttaaaaatccccgcattcctttccttccaaat 28517166  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 1259328 - 1259386
Alignment:
Q  11 gtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga 69  Q
    ||||||||||| |||||||| ||||||||||| |  |||||||||| ||||| ||||||    
T  1259328 gtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaaga 1259386  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 37242616 - 37242674
Alignment:
Q  11 gtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga 69  Q
    ||||||||||| |||||||| ||||||||||| |  |||||||||| ||||| ||||||    
T  37242616 gtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaaga 37242674  T

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Target: scaffold0495 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 9534 - 9492
Alignment:
Q  12 tccactcataaaagaggaaggaagctatcttaagtctactcaa 54  Q
    ||||||||||||||||||| ||||||||||| |||||||||||    
T  9534 tccactcataaaagaggaaagaagctatcttcagtctactcaa 9492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 31234777 - 31234838
Alignment:
Q  8 caagtccactcataaaagaggaaggaagctatcttaagtctactcaacacccaaaaccaaga 69  Q
    |||||||||||||| |||||||| ||||||||||| |  |||||||||| ||||| ||||||    
T  31234777 caagtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaaga 31234838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 21245336 - 21245388
Alignment:
Q  107 ttaaaaatcctcgcatttctttccttccaaattgtccaaattgttgcatgcca 159  Q
    ||||||||| |||||||||| |||||||||||   ||||||||| ||||||||    
T  21245336 ttaaaaatcttcgcatttctctccttccaaatcaaccaaattgtggcatgcca 21245388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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