View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447-Insertion-26 (Length: 235)
Name: NF3447-Insertion-26
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447-Insertion-26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 5370613 - 5370395
Alignment:
| Q |
8 |
aatatgtgttgggtcggtcctgtcattgaggtctctatactaaggcatacacatgacagtatgacacatccatcaagaaaaatggctttgttctaggaac |
107 |
Q |
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| T |
5370613 |
aatatgtgttgggtcggtcctgtcattgaggtctctatactaaggcatacacatgaca--------catccatcaagaaaaatggctttgttctaggaac |
5370522 |
T |
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| Q |
108 |
aaaatttcacgagtacttgaatttcaaacaataaatctatgacatatggtgaatattacttcnnnnnnnnnnnnnnagagaatatggtgaatattactag |
207 |
Q |
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| T |
5370521 |
aaaatttcacgagtacttaaatttcaaacaataaatctatgacatatagtgaatattactt-tttttttttttttgagagaatatggtgaatattactag |
5370423 |
T |
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| Q |
208 |
tatgtcatagatgagaagtatacatgga |
235 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
5370422 |
tatgtcatagatgagaagtatacatgga |
5370395 |
T |
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