View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3447-Insertion-3 (Length: 1077)
Name: NF3447-Insertion-3
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447-Insertion-3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 976; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 976; E-Value: 0
Query Start/End: Original strand, 8 - 1074
Target Start/End: Original strand, 8691729 - 8692800
Alignment:
| Q |
8 |
acatcgatatgcagagtccgtttgaaactattgaagaggaaaatcagttcattaattcgatgttaaatgacggatattttgttaatagcgaaaaaataag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8691729 |
acatcgatatgcagagtccgtttgaaactattgaagaggaaaatcagttcattaattcgatgttaaatgacggatattttgttaatagcgaaaaaataag |
8691828 |
T |
|
| Q |
108 |
acacacttttgtcaactttcctgtccagtccaagtcgttgagaatgatcgactatggaagcagtgacacagatgctgaattagtctctaagccggtaaat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8691829 |
acacacttttgtcaactttcctgtccagtccaagtcgttgagaatgatcgactatggaagcagtgacacagatgctgaattagtctctaagccggtaaat |
8691928 |
T |
|
| Q |
208 |
attttctttgatacattcagaagttcttttttcttcatactgtgatgtagctgtttttctcttccttttgaaatgctactagaatggaatttcatattgt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8691929 |
attttctttgatacattcagaagttcttttttcttcatactgtgatgtagctgtttttctcttccttttgaaatgctactagaatggaatttcatattgt |
8692028 |
T |
|
| Q |
308 |
ttattttcttctaaaattttacagtgtcacaatgttctggatacttcaacggcgtttcttgagcatcctagctcaagcgaatactatgcatcatttcgaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8692029 |
ttattttcttctaaaattttacagtgtcgcaatgttctggatacttcaacggcgtttcttgagcatcctagctcaagcgaatactatgcatcatttcgaa |
8692128 |
T |
|
| Q |
408 |
atgatttcgggggattggaggcatcctcttgtgactcatctgcagataaacctctagagatgatcaattgttttgaaatttctagtgcaccttccactct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8692129 |
atgatttcgggggattggaggcatcctcttgtgactcatctgcagataaacctctagagatgatcaattgttttgaaatttctagtgcaccttccactct |
8692228 |
T |
|
| Q |
508 |
aagaagaaacaaaaaccagtatcatccaagaccagccaccttcatgtcaaaaagagctgcttcaagaatatctcaaacatagaacatggtttgaactttg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8692229 |
aagaagaaacaaaaaccagtatcatccaagaccagccaccttcatgtcaaaaagagctgcttcaagaatatctcaaacatagaacatggtttgaactttg |
8692328 |
T |
|
| Q |
608 |
aaccaatgcaatgtccaatgttgaagtaagaaaaccagctgaactaagaatggataagccttagttgatcaaatgattcatttgaagcaaatttaatttt |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8692329 |
aaccaatgcaatgtccaatgttgaagtaagaaaaccagctgaactaagaatggataagccttagttgatcaaatgattcatttgaagcaaatttaatttt |
8692428 |
T |
|
| Q |
708 |
aacatattaggcaaagaaatattagcttagtggtaagagtttgattttttaactagacatggttcaaattcctttagagacaattgtaaaatggtcatta |
807 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8692429 |
aacatattagacaaagaaatattagcttagtggtaagagtttgattttttaactagacatggttcaaattcctttagagacaattgtaaaatggtcatta |
8692528 |
T |
|
| Q |
808 |
tatgcttaatgtgatgcattgtacagactgagaaggaatttgtccttccatctcatcactttagttttctgtaaagacaaatgtgatggcattcatcaaa |
907 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8692529 |
catgcttaatgtgatgcattgtacagactgagaaggaatttgtccttccatctcatcactttagttttctgtaaagacaaatgtgatggcat---tcaaa |
8692625 |
T |
|
| Q |
908 |
tctttgattgtcacaatgtgaacattaaaggtaaataaattttattttgttagatgaaattagaacaattctatc-agatg-agtttctttcattgtaag |
1005 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
8692626 |
tctttgattgtcacaatgtgaacattaaaggtaaataaattttattttgttagatgaaattagaacaattctatcaagatgaagtttctttcattgtaag |
8692725 |
T |
|
| Q |
1006 |
ttgcatca-tgta---gcatgtgatttt-atcttgtgtgta-ttgatcatcatgatgaaatta-ttaaacataaaa |
1074 |
Q |
| |
|
|||||||| |||| ||||||||||| ||| |||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
8692726 |
ttgcatcattgtaaggccatgtgattttcatc-tgtgtgtatttgatcatcatgatgaaattatttaaacataaaa |
8692800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 319 - 720
Target Start/End: Complemental strand, 14384714 - 14384317
Alignment:
| Q |
319 |
taaaattttacagtgtcacaatgttctggatacttcaacggcgtttcttgagcatcctagctcaagcgaatactatgcatcatttcgaaatgatttcggg |
418 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14384714 |
taaaattttacagtatggcaatgttctggatacttcaacggcttttcttgaacatcctagttcaggcgaatactatgcatcatttcgagatgatttcggg |
14384615 |
T |
|
| Q |
419 |
ggattggaggcatcctcttgtgactcatctgcagataaacctctagagatgatcaattgttttgaaatttctagtgcaccttccactctaagaagaaaca |
518 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14384614 |
ggattggaggcatcctcttgtgactcaactgcagataaacctcaaaagatgatcaattgttatgaaatttccagtgcaccttccactctaagaagaaaca |
14384515 |
T |
|
| Q |
519 |
aaaaccagtatcatccaagaccagccaccttcatgtcaaaaagagctgcttcaagaatatctcaaacatagaacatggtttgaactttgaaccaatgcaa |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| || |||||||||||| | || ||| || |||||||| |
|
|
| T |
14384514 |
aaaaccagtatcatccaagaccagccaccttcatttcaaaaagagccgattcaagacgatttcaaacatagaagaagg-------tttcaagcaatgcaa |
14384422 |
T |
|
| Q |
619 |
tgtccaatgttgaagtaagaaaac----cagctgaactaagaatggataagccttagttgatcaaatgattcatttgaagcaaatttaattttaacatat |
714 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| | ||||||| |||||||||||| |||||||||||| |||||| ||| | ||||| |
|
|
| T |
14384421 |
tgtccaatgttgaagtaagaaaaccaagcagctgaactaagaatgaagaagcctttgttgatcaaatg-ttcatttgaagcgaatttagtttcatcatat |
14384323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 411 - 572
Target Start/End: Original strand, 8706997 - 8707158
Alignment:
| Q |
411 |
atttcgggggattggaggcatcctcttgtgactcatctgcagataaacctctagagatgatcaattgttttgaaatttctagtgcaccttccactctaag |
510 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||| ||||||||| |||| | ||||||||||||||| || |||| |||||| | |||||||||||||| |
|
|
| T |
8706997 |
attttgggggattagaggcatcctcttgtgattcaactgcagatatacctttggagatgatcaattgtattaaaatatctagttcgccttccactctaag |
8707096 |
T |
|
| Q |
511 |
aagaaacaaaaaccagtatcatccaagaccagccaccttcatgtcaaaaagagctgcttcaa |
572 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8707097 |
aaaacacaaaaaccagtatcatccaagaccagccatcttcatgtcaaaaagagctgcttcaa |
8707158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 209 - 400
Target Start/End: Original strand, 8706703 - 8706893
Alignment:
| Q |
209 |
ttttctttgatacattcagaagttcttttttcttcatactgtgatgtagctgtttttctcttccttttgaaatgctactagaatggaatttcatattgtt |
308 |
Q |
| |
|
|||||||| ||| | |||||||| || ||||||| ||||| |||||| |||||| |||||||||||||||||||||| |||| || | ||||||| |||| |
|
|
| T |
8706703 |
ttttctttaatagactcagaagtactcttttctttatactttgatgtggctgttattctcttccttttgaaatgcta-tagattgaactttcataatgtt |
8706801 |
T |
|
| Q |
309 |
tattttcttctaaaattttacagtgtcacaatgttctggatacttcaacggcgtttcttgagcatcctagctcaagcgaatactatgcatca |
400 |
Q |
| |
|
|||||||||||| ||||||||||||| | || |||| |||||||||||||| |||||||| |||||||| ||| ||||||||| ||||||| |
|
|
| T |
8706802 |
tattttcttctacaattttacagtgtggcgatattcttgatacttcaacggcatttcttgaacatcctagttcaggcgaatactgtgcatca |
8706893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 646 - 803
Target Start/End: Original strand, 8707188 - 8707346
Alignment:
| Q |
646 |
ctgaactaagaatggataagccttagttgatcaaatgattcatttgaagcaaatttaattttaacatattaggcaaagaaatattagcttagtggtaaga |
745 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||| ||||||||||| | | ||| | ||||||||||||||| | |
|
|
| T |
8707188 |
ctgaactaagaatgaagaagcctatcttgatcaaatgattcattcgaagcaaatttaattctaacatattagaccatgaagtgttagcttagtggtaaca |
8707287 |
T |
|
| Q |
746 |
gtttgattttttaactagac-atggttcaaattcctttagagacaattgtaaaatggtc |
803 |
Q |
| |
|
|||||||||| |||| |||| || |||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
8707288 |
gtttgattttataaccagacaatagttcaaattcctgtaggaacagttgtaaaatggtc |
8707346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 711 - 807
Target Start/End: Complemental strand, 14383447 - 14383349
Alignment:
| Q |
711 |
atattaggcaaagaaatattagcttagtggtaagagtttgatttttt--aactagacatggttcaaattcctttagagacaattgtaaaatggtcatta |
807 |
Q |
| |
|
|||||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
14383447 |
atattaggtaaagaagtattagcttagtgataagagtttgattttttttaactagacatggttcaaattccttttgagacaactgtaaaatggtcatta |
14383349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 804 - 894
Target Start/End: Complemental strand, 14383277 - 14383187
Alignment:
| Q |
804 |
attatatgcttaatgtgatgcattgtacagactgagaaggaatttgtccttccatctcatcactttagttttctgtaaagacaaatgtgat |
894 |
Q |
| |
|
|||| ||||||||||||||||| | | |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
14383277 |
attacatgcttaatgtgatgcaatctgcagactgagaaggaatttgtccttccatctcaccacattagttttctgtaaagacaaatgtgat |
14383187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 8706462 - 8706541
Alignment:
| Q |
129 |
tgtccagtccaagtcgttgagaatgatcgactatggaagcagtgacacagatgctgaattagtctctaagccggtaaata |
208 |
Q |
| |
|
|||||||||| ||||||||| |||| || ||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
8706462 |
tgtccagtccgagtcgttgaaaatggtctactatggaagcagtgacacagatgctgaagtagtctctacaccggtaaata |
8706541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 844 - 894
Target Start/End: Original strand, 8699309 - 8699359
Alignment:
| Q |
844 |
aatttgtccttccatctcatcactttagttttctgtaaagacaaatgtgat |
894 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
8699309 |
aatttgtccttccatctcaccactttagttttctgtaaagacaattgtgat |
8699359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 919 - 972
Target Start/End: Original strand, 8707631 - 8707683
Alignment:
| Q |
919 |
cacaatgtgaacattaaaggtaaataaattttattttgttagatgaaattagaa |
972 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
8707631 |
cacaatgtgaatattgaaggtaaataaa-tttattttgtttgatgaatttagaa |
8707683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University