View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447-Insertion-30 (Length: 80)
Name: NF3447-Insertion-30
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447-Insertion-30 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 74; Significance: 1e-34; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-34
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 4712967 - 4712894
Alignment:
| Q |
7 |
aagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatca |
80 |
Q |
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| T |
4712967 |
aagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatca |
4712894 |
T |
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Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-20
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 4698091 - 4698018
Alignment:
| Q |
7 |
aagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatca |
80 |
Q |
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| T |
4698091 |
aagaggttcgttatccgaaccatagagatattcacgaagagtgccacgttccatgaagtcgtaaacgagaatca |
4698018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 4846922 - 4846849
Alignment:
| Q |
7 |
aagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatca |
80 |
Q |
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| T |
4846922 |
aagaggttcattatccgaaccatagagatgttcactgagagtaccacgttgcatgaagtcataaactagaatca |
4846849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-18
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 4863104 - 4863177
Alignment:
| Q |
7 |
aagaggttcgttatccgaaccatagagatgttcacggagagtgccatgttccataaagtcataaacaagaatca |
80 |
Q |
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||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||| ||||||||||| ||||||| |
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| T |
4863104 |
aagaggttcattatccgaaccataaagatattcacggagagtgccacgttgcatgaagtcataaacgagaatca |
4863177 |
T |
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