View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3447-Insertion-4 (Length: 1050)

Name: NF3447-Insertion-4
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3447-Insertion-4
NF3447-Insertion-4
[»] chr4 (9 HSPs)
chr4 (126-535)||(25901698-25902107)
chr4 (587-835)||(25902113-25902358)
chr4 (206-339)||(1511522-1511655)
chr4 (8-89)||(25901580-25901661)
chr4 (853-936)||(25902360-25902449)
chr4 (894-938)||(22872331-22872375)
chr4 (904-935)||(41436602-41436633)
chr4 (901-931)||(30680390-30680420)
chr4 (894-936)||(39258215-39258257)
[»] chr2 (6 HSPs)
chr2 (206-449)||(2437466-2437707)
chr2 (592-690)||(25824676-25824774)
chr2 (894-936)||(9724998-9725040)
chr2 (903-936)||(32556290-32556323)
chr2 (894-936)||(45464160-45464202)
chr2 (903-936)||(883107-883140)
[»] chr1 (3 HSPs)
chr1 (206-419)||(27537485-27537701)
chr1 (535-589)||(10821972-10822026)
chr1 (903-936)||(34332230-34332263)
[»] chr3 (3 HSPs)
chr3 (12-89)||(52002603-52002680)
chr3 (168-204)||(52002716-52002752)
chr3 (894-931)||(51165077-51165114)
[»] chr8 (3 HSPs)
chr8 (597-690)||(32442803-32442896)
chr8 (901-936)||(26677194-26677229)
chr8 (894-936)||(42412328-42412370)
[»] scaffold0086 (1 HSPs)
scaffold0086 (894-931)||(5941-5978)
[»] chr5 (2 HSPs)
chr5 (890-936)||(4475364-4475411)
chr5 (894-931)||(35585562-35585599)


Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 126 - 535
Target Start/End: Original strand, 25901698 - 25902107
Alignment:
Q  126 gatgcaggattaattagggattttcaccnnnnnnncaataacaattggatccttcaacacagattaatttcaaaagggtacacttttttcttttcaattt 225  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901698 gatgcaggattaattagggattttcaccaaaaaaacaataacaattggatccttcaacacagattaatttcaaaagggtacacttttttcttttcaattt 25901797  T
Q  226 acatagatatgttgacagtatgagaatggctgaatgatcatgacatgacaatatgagctaggttctatgagactggtttaagatctatggatcaacaaca 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901798 acatagatatgttgacagtatgagaatggctgaatgatcatgacatgacaatatgagctaggttctatgagactggtttaagatctatggatcaacaaca 25901897  T
Q  326 tgatacaaactgtataaatcaagatcattgatgctataaaaaattccatttatcttccgcattgttctttagctatattgactctattcattttgagtac 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901898 tgatacaaactgtataaatcaagatcattgatgctataaaaaattccatttatcttccgcattgttctttagctatattgactctattcattttgagtac 25901997  T
Q  426 tctactgtatttttctgtcatcatttatttnnnnnnntgtcaccaagaaatgtttaaatttctttcaacttctcaacttatatgtgggagctataaaatt 525  Q
    ||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901998 tctactgtatttttctgtcatcatttatttaaaaaaatgtcacaaagaaatgtttaaatttctttcaacttctcaacttatatgtgggagctataaaatt 25902097  T
Q  526 agaaccaact 535  Q
    ||||||||||    
T  25902098 agaaccaact 25902107  T

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Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 587 - 835
Target Start/End: Original strand, 25902113 - 25902358
Alignment:
Q  587 gaaagcttaagttggtttcttcttctgtgtcgatgtccttataattagctaactacatctaatactaaactctttggatatcagattaaaattgctggta 686  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  25902113 gaaagcttaagttggtttcttcttgtgtgtcgatgtccttataattagctaacta-atctaatactaaactttttggatatcagattaaaattgctggta 25902211  T
Q  687 tttttcacatatcttttaaagatatgtgaaaaaccttagattttaacatagtttgaagcaaagattaatcttatatcggatgaatcaaaactcaaaaaga 786  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25902212 tttttcacatatcttttaaagatatgtgaaaaaccttagattttaacatagtttgaagcaaagattaatcttatatcggatgaatcaaaactcaaaaaga 25902311  T
Q  787 gttcaaaacttctatttgatttatttatttggtggactaatttgtttca 835  Q
    |||| |||| ||||||||| ||||||||||| || ||||||||||||||    
T  25902312 gttcgaaac-tctatttga-ttatttatttgttgaactaatttgtttca 25902358  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 206 - 339
Target Start/End: Original strand, 1511522 - 1511655
Alignment:
Q  206 cacttttttcttttcaatttacatagatatgttgacagtatgagaatggctgaatgatcatgacatgacaatatgagctaggttctatgagactggttta 305  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||  |    
T  1511522 cacttttttcttttcattttacatagatatgttgacagtatgagaatggttgaatgatcatgacatggcagtatgagctaggttctatgagattggtgca 1511621  T
Q  306 agatctatggatcaacaacatgatacaaactgta 339  Q
    |||||| |||||| ||| |||||| |||| ||||    
T  1511622 agatctctggatctacaccatgatgcaaattgta 1511655  T

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Target: chr4; HSP #4
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 25901580 - 25901661
Alignment:
Q  8 atatcaacaaccctggcttccgtgcacaacaaatttcaacccttgtgtctgcactcctctccacctcaaactgcaaagtaac 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25901580 atatcaacaaccctggcttccgtgcacaacaaatttcaacccttgtgtctgcactcctctccacctcaaactgcaaagtaac 25901661  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 853 - 936
Target Start/End: Original strand, 25902360 - 25902449
Alignment:
Q  853 gagtccactcaacatatctacttct--cgtcccatat--actgagcattttctt-atttcacacatattaag-aaaagtgtataagtgaa 936  Q
    ||||| ||||||||||||||||||   |||||||||   ||||||||||||| | ||||||||||||||||| |||||||||||||||||    
T  25902360 gagtcaactcaacatatctacttcctccgtcccataataactgagcattttcctcatttcacacatattaagaaaaagtgtataagtgaa 25902449  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 894 - 938
Target Start/End: Original strand, 22872331 - 22872375
Alignment:
Q  894 cattttcttatttcacacatattaagaaaagtgtataagtgaaga 938  Q
    ||||| || ||||||||||||||||||||| ||||||||||||||    
T  22872331 catttgctcatttcacacatattaagaaaaatgtataagtgaaga 22872375  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 904 - 935
Target Start/End: Complemental strand, 41436633 - 41436602
Alignment:
Q  904 tttcacacatattaagaaaagtgtataagtga 935  Q
    ||||||||||||||||||||||||||||||||    
T  41436633 tttcacacatattaagaaaagtgtataagtga 41436602  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 901 - 931
Target Start/End: Original strand, 30680390 - 30680420
Alignment:
Q  901 ttatttcacacatattaagaaaagtgtataa 931  Q
    |||||||||||||||||||||||||||||||    
T  30680390 ttatttcacacatattaagaaaagtgtataa 30680420  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 894 - 936
Target Start/End: Original strand, 39258215 - 39258257
Alignment:
Q  894 cattttcttatttcacacatattaagaaaagtgtataagtgaa 936  Q
    ||||| ||||||||||||||||||| |||| ||||||||||||    
T  39258215 catttgcttatttcacacatattaaaaaaaatgtataagtgaa 39258257  T

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Target: chr2 (Bit Score: 173; Significance: 2e-92; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 206 - 449
Target Start/End: Complemental strand, 2437707 - 2437466
Alignment:
Q  206 cacttttttcttttcaatttacatagatatgttgacagtatgagaatggctgaatgatcatgacatgacaatatgagctaggttctatgagactggttta 305  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||    
T  2437707 cacttttttcttttcaatttacata--tatgttgacagtatgagaatggctgaatgatcatggcatgatagtatgagctaggttctatgagactggttta 2437610  T
Q  306 agatctatggatcaacaacatgatacaaactgtataaatcaagatcattgatgctataaaaaattccatttatcttccgcattgttctttagctatattg 405  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| |||  ||||||||| ||| || ||||||| |||| |||||||||||||||||||||    
T  2437609 agatctatggatctacaacatgatacaaactgtataactcaagctcagagatgctatacaaattttcatttatattcctcattgttctttagctatattg 2437510  T
Q  406 actctattcattttgagtactctactgtatttttctgtcatcat 449  Q
    ||| |||||||||||||||||| |||||||||||||||||||||    
T  2437509 actgtattcattttgagtactccactgtatttttctgtcatcat 2437466  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 592 - 690
Target Start/End: Complemental strand, 25824774 - 25824676
Alignment:
Q  592 cttaagttggtttcttcttctgtgtcgatgtccttataattagctaactacatctaatactaaactctttggatatcagattaaaattgctggtatttt 690  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25824774 cttaagttggtttcttcttgcgtgtcgatatccttataattagctaactacatctaatactaaactctttggatatcagattaaaattgctggtatttt 25824676  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 894 - 936
Target Start/End: Complemental strand, 9725040 - 9724998
Alignment:
Q  894 cattttcttatttcacacatattaagaaaagtgtataagtgaa 936  Q
    |||||||| ||||||||||||||||||||||||||||| ||||    
T  9725040 cattttctcatttcacacatattaagaaaagtgtataaatgaa 9724998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 903 - 936
Target Start/End: Complemental strand, 32556323 - 32556290
Alignment:
Q  903 atttcacacatattaagaaaagtgtataagtgaa 936  Q
    ||||||||||||||||||||||||||||||||||    
T  32556323 atttcacacatattaagaaaagtgtataagtgaa 32556290  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 894 - 936
Target Start/End: Original strand, 45464160 - 45464202
Alignment:
Q  894 cattttcttatttcacacatattaagaaaagtgtataagtgaa 936  Q
    ||||| || ||||||||||||||||||||| ||||||||||||    
T  45464160 catttgctcatttcacacatattaagaaaaatgtataagtgaa 45464202  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 903 - 936
Target Start/End: Original strand, 883107 - 883140
Alignment:
Q  903 atttcacacatattaagaaaagtgtataagtgaa 936  Q
    ||||||||||| ||||||||||||||||||||||    
T  883107 atttcacacattttaagaaaagtgtataagtgaa 883140  T

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Target: chr1 (Bit Score: 98; Significance: 1e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 206 - 419
Target Start/End: Complemental strand, 27537701 - 27537485
Alignment:
Q  206 cacttttttcttttcaatttacataga--tatgttgacagtatgagaatggctgaatgatcatgacatgacaatatgagctaggttctatgagactggtt 303  Q
    ||||||||||||| || ||||||||||  ||||||| ||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||| ||||     
T  27537701 cacttttttctttacattttacatagagatatgttggcagtatgagaatggctgaatgatcatggcatgacagtatgagataggttctatgagattggtg 27537602  T
Q  304 taagatctatggatcaacaacatgatacaaactgtataaatcaagatcattgatgctataaaaaattccatttatcttccgcattgttctttagctata- 402  Q
     ||||||| |||||| |||||||||| |||| ||||||  ||||| |||  ||||||||| ||| || ||||| | |||| ||||||||||||||||||     
T  27537601 caagatctctggatctacaacatgatgcaaattgtatatctcaaggtcacagatgctatacaaattttcatttgtattcctcattgttctttagctatat 27537502  T
Q  403 ttgactctattcatttt 419  Q
    |||||| ||||||||||    
T  27537501 ttgactgtattcatttt 27537485  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 535 - 589
Target Start/End: Original strand, 10821972 - 10822026
Alignment:
Q  535 ttatatatgattcttatacttaaccaactgctcacatgaaagctaacaattagaa 589  Q
    |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  10821972 ttatatatgattgttatatttaaccaactgctcacatgaaagcaaacaattagaa 10822026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 903 - 936
Target Start/End: Complemental strand, 34332263 - 34332230
Alignment:
Q  903 atttcacacatattaagaaaagtgtataagtgaa 936  Q
    ||||||||||||||||||||| ||||||||||||    
T  34332263 atttcacacatattaagaaaaatgtataagtgaa 34332230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 52002603 - 52002680
Alignment:
Q  12 caacaaccctggcttccgtgcacaacaaatttcaacccttgtgtctgcactcctctccacctcaaactgcaaagtaac 89  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  52002603 caacaaccctggcttccctgcacaacaaatttcaacccttgtgtccgcgctcctctccacctcaaactgcaaagtaac 52002680  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 52002716 - 52002752
Alignment:
Q  168 aattggatccttcaacacagattaatttcaaaagggt 204  Q
    |||||||||||||||||||||||||||||||||||||    
T  52002716 aattggatccttcaacacagattaatttcaaaagggt 52002752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 894 - 931
Target Start/End: Complemental strand, 51165114 - 51165077
Alignment:
Q  894 cattttcttatttcacacatattaagaaaagtgtataa 931  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  51165114 cattttctgatttcacacaaattaagaaaagtgtataa 51165077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 7e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 597 - 690
Target Start/End: Complemental strand, 32442896 - 32442803
Alignment:
Q  597 gttggtttcttcttctgtgtcgatgtccttataattagctaactacatctaatactaaactctttggatatcagattaaaattgctggtatttt 690  Q
    |||||||||||||| ||| | ||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  32442896 gttggtttcttcttgtgtattgatatccttataactagctgactacatctaatactaaactctttagatatcagattaaaatggctggcatttt 32442803  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 901 - 936
Target Start/End: Complemental strand, 26677229 - 26677194
Alignment:
Q  901 ttatttcacacatattaagaaaagtgtataagtgaa 936  Q
    ||||||||||||||||||||||| ||||||||||||    
T  26677229 ttatttcacacatattaagaaaaatgtataagtgaa 26677194  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 894 - 936
Target Start/End: Original strand, 42412328 - 42412370
Alignment:
Q  894 cattttcttatttcacacatattaagaaaagtgtataagtgaa 936  Q
    ||||| || ||||||||||||||||||||| ||||||||||||    
T  42412328 catttgctcatttcacacatattaagaaaaatgtataagtgaa 42412370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 894 - 931
Target Start/End: Complemental strand, 5978 - 5941
Alignment:
Q  894 cattttcttatttcacacatattaagaaaagtgtataa 931  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  5978 cattttcttatttcacacaaattaagaaaagtgtataa 5941  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 890 - 936
Target Start/End: Complemental strand, 4475411 - 4475364
Alignment:
Q  890 tgagcattttctt-atttcacacatattaagaaaagtgtataagtgaa 936  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||    
T  4475411 tgagcattttgttcattgcacacatattaagaaaagtgtataagtgaa 4475364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 894 - 931
Target Start/End: Original strand, 35585562 - 35585599
Alignment:
Q  894 cattttcttatttcacacatattaagaaaagtgtataa 931  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  35585562 catttgcttatttcacacatattaagaaaaatgtataa 35585599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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