View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3447-Insertion-6 (Length: 961)

Name: NF3447-Insertion-6
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3447-Insertion-6
NF3447-Insertion-6
[»] chr3 (8 HSPs)
chr3 (168-961)||(15761607-15762392)
chr3 (16-85)||(7940863-7940932)
chr3 (16-83)||(15004459-15004526)
chr3 (7-85)||(23320132-23320210)
chr3 (7-85)||(23638087-23638165)
chr3 (20-85)||(35095027-35095092)
chr3 (15-61)||(23803108-23803154)
chr3 (15-61)||(37055428-37055474)
[»] chr5 (4 HSPs)
chr5 (168-601)||(5671989-5672420)
chr5 (655-750)||(5671293-5671388)
chr5 (16-85)||(10665003-10665072)
chr5 (652-696)||(13755907-13755951)
[»] chr7 (10 HSPs)
chr7 (168-601)||(13331517-13331949)
chr7 (168-601)||(13342432-13342864)
chr7 (7-134)||(8420823-8420949)
chr7 (655-750)||(13330846-13330941)
chr7 (655-750)||(13341761-13341856)
chr7 (13-85)||(12624705-12624776)
chr7 (15-85)||(7899524-7899594)
chr7 (482-588)||(33430229-33430336)
chr7 (15-85)||(19868184-19868254)
chr7 (15-61)||(2276745-2276791)
[»] chr2 (4 HSPs)
chr2 (168-602)||(26661223-26661646)
chr2 (482-588)||(6049931-6050037)
chr2 (168-277)||(6049624-6049732)
chr2 (18-85)||(15231904-15231971)
[»] chr8 (5 HSPs)
chr8 (168-602)||(32717808-32718243)
chr8 (168-602)||(10637351-10637786)
chr8 (15-73)||(7393294-7393352)
chr8 (16-85)||(31133907-31133975)
chr8 (15-85)||(20514703-20514773)
[»] chr6 (3 HSPs)
chr6 (168-602)||(21481141-21481564)
chr6 (168-401)||(19700890-19701122)
chr6 (470-602)||(19701165-19701298)
[»] chr1 (8 HSPs)
chr1 (168-602)||(22893507-22893941)
chr1 (15-85)||(9516651-9516721)
chr1 (482-588)||(44306148-44306253)
chr1 (15-85)||(35438785-35438855)
chr1 (168-277)||(44305841-44305949)
chr1 (16-85)||(13241828-13241897)
chr1 (25-81)||(43909273-43909329)
chr1 (24-85)||(24669006-24669067)
[»] scaffold0586 (2 HSPs)
scaffold0586 (168-405)||(9321-9559)
scaffold0586 (470-602)||(9598-9731)
[»] chr4 (7 HSPs)
chr4 (482-588)||(13893703-13893809)
chr4 (168-277)||(13893984-13894092)
chr4 (12-85)||(1378085-1378158)
chr4 (15-85)||(51070434-51070504)
chr4 (15-82)||(2096941-2097008)
chr4 (13-84)||(6875569-6875640)
chr4 (7-45)||(42480000-42480038)
[»] scaffold0500 (1 HSPs)
scaffold0500 (168-206)||(362-400)
[»] scaffold0149 (1 HSPs)
scaffold0149 (7-85)||(22526-22604)


Alignment Details
Target: chr3 (Bit Score: 635; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 168 - 961
Target Start/End: Complemental strand, 15762392 - 15761607
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  15762392 gaatctaaggctggaatcgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccc-aggaaagtaatacacccacg 15762294  T
Q  268 ttctcccccattttcccccacgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagttttattcccatggaatggaaaccatgat 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15762293 ttctcccccattttcccccacgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagatttattcccatggaatggaaaccatgat 15762194  T
Q  368 cttcaataaaataccatttttatccttgtcattcccgccattctttttctctgattcccgctaaacattttcactcatcttcttctatataaaaaacatc 467  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  15762193 cttcaataaaataccatttttgtccttgtcattcgtgccattctttttctctgattcccactaaacattttcactcatgttcttctatataaaaaacatc 15762094  T
Q  468 ctatgatctttgtatgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattac 567  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15762093 atatgatctttgtatgttcatcaactatttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttctattac 15761994  T
Q  568 tcaacatagatttggtgattggtataatttctctgnnnnnnnnnctttctttctgctattgttgtttattgccttgtctcaacattgaacagaatatctt 667  Q
    |||||||||||||||||||||||||| ||||||||          |||  ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15761993 tcaacatagatttggtgattggtatattttctctgtttttt----ttttcttctgctattgttgtttattgccttgtctcaacattgaacaaaatatctt 15761898  T
Q  668 tggtctatgagtaggatttatagatctttacttcaaccctgtaattttcttccatttaaaataacaaattgaaatagtagatatagaagccgtgcaaatt 767  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15761897 tggtctatgagtaggatttatagatctttacttcaaccctgtaattttcttccatttaaaataacaaattgaaatagtagatatagaagccgtgcaaatt 15761798  T
Q  768 atgctttgtttgttacgattgggtgggaggttgttttggtactgctagnnnnnnnngtttgctgcgtttttgtaattctaggcttttattttatcctgga 867  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||        |||||||||||||||||| |||||||||||||||||||||||||    
T  15761797 atgctttgtttgttacggttgggtgggaggttgttttggtactgctag-tttttttgtttgctgcgtttttgtagttctaggcttttattttatcctgga 15761699  T
Q  868 ctgctatttgccaacggttggttgtttctgctgccatcagttttggtttatagtgagtcttggaccttttgtaattgcttgccgtttagcacct 961  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  15761698 ctgctatttgctaacggttggctgtttctgctgccatcagttttggtt--tagtgagtcttggaccttttgtaattgcttgccgtttagcacct 15761607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 7940863 - 7940932
Alignment:
Q  16 aattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    ||||||||||||||||||| |||||||||||| ||| ||| |||||| |||| |||||||||||||||||    
T  7940863 aattatttattaaaaagttatatatttaatataaaatacagaagttacaagacaaatttaccattttaaa 7940932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 15004526 - 15004459
Alignment:
Q  16 aattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccatttta 83  Q
    ||||||||||||||||||| || ||||||||| |||||  |||||| |||||||||||||||||||||    
T  15004526 aattatttattaaaaagttatacatttaatataaaagattcaagttttaagataaatttaccatttta 15004459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 23320132 - 23320210
Alignment:
Q  7 aaaagcatcaattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    |||| ||||||||||||||||||||| | |||||||||||| ||| |||| ||||  |||| |||||||||||||||||    
T  23320132 aaaaacatcaattatttattaaaaagatatatatttaatataaaatacacgagtttcaagacaaatttaccattttaaa 23320210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 23638165 - 23638087
Alignment:
Q  7 aaaagcatcaattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    |||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||  ||||  || |||||||||||||    
T  23638165 aaaaacatcaattatttaataaaaagttgtatatttaatataaaatacacaagtttcaagactaacttaccattttaaa 23638087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 35095027 - 35095092
Alignment:
Q  20 atttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    |||||||||||||||||||||||||||| ||| | | || ||  ||||||||||||| ||||||||    
T  35095027 atttattaaaaagttgtatatttaatataaaatatataaatttcaagataaatttactattttaaa 35095092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 23803154 - 23803108
Alignment:
Q  15 caattatttattaaaaagttgtatatttaatatgaaagacacaagtt 61  Q
    |||||||||||| ||||||| |||||||||||||||| | |||||||    
T  23803154 caattatttattcaaaagttttatatttaatatgaaatatacaagtt 23803108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 37055474 - 37055428
Alignment:
Q  15 caattatttattaaaaagttgtatatttaatatgaaagacacaagtt 61  Q
    |||||||||||||||||||| |||| ||||||| ||| |||||||||    
T  37055474 caattatttattaaaaagttttatagttaatataaaaaacacaagtt 37055428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 237; Significance: 1e-130; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 168 - 601
Target Start/End: Complemental strand, 5672420 - 5671989
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    ||||||||||||||||||||||||| |||| |||||||| |||| |||||||||| ||||  |||||||||||||| || |||||||||  | |||||||    
T  5672420 gaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacattttttcc-aggaaagtagtaaacccacg 5672322  T
Q  268 ttctcccccattttccccc-acgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagttttattcccatggaatggaaacc-atg 365  Q
    ||||||||||||||||||| ||||||||||  |||| ||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||    
T  5672321 ttctcccccattttccccccacgttcaaccctttttccatccattctattcccatgaaatagcttgggaaagtttcattccca-ggaattgaaacccatg 5672223  T
Q  366 atcttcaataaaataccatttttatccttgtcattcccgccattctttttctctgattcccgctaaacattttcactcatcttcttctatataaaaaaca 465  Q
    ||||||||||||| |||||||||  ||||||||||||||| |||||||  |||||||||||||||||||||||||| ||| || |||||||||||| | |    
T  5672222 atcttcaataaaaaaccatttttgcccttgtcattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagata 5672125  T
Q  466 tcctatgatctttgtatgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccatt 565  Q
     || ||||||||||| ||||||||||||| ||||| |||  | ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||    
T  5672124 acccatgatctttgtgtgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccatt 5672025  T
Q  566 actcaacatagatttggtgattggtataatttctct 601  Q
    |||||||||||||||||||||||||| |||||||||    
T  5672024 actcaacatagatttggtgattggtaaaatttctct 5671989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 655 - 750
Target Start/End: Complemental strand, 5671388 - 5671293
Alignment:
Q  655 aacagaatatctttggtctatgagtaggatttatagatctttacttcaaccctgtaattttcttccatttaaaataacaaattgaaatagtagata 750  Q
    |||| ||||||||||| ||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||||||||||||||||| |||||    
T  5671388 aacaaaatatctttggcctatgagtaggatttatagatctttcctgcaaccctgcaatttttttccatttaaaataacaaattgaaatagaagata 5671293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 10665072 - 10665003
Alignment:
Q  16 aattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    ||||||||||||||||||| || |||||||||| || |||||||||  |||| ||| |||||||||||||    
T  10665072 aattatttattaaaaagttataaatttaatatgcaatacacaagttccaagacaaacttaccattttaaa 10665003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 652 - 696
Target Start/End: Complemental strand, 13755951 - 13755907
Alignment:
Q  652 ttgaacagaatatctttggtctatgagtaggatttatagatcttt 696  Q
    ||||||| ||||||||||||||||||||  |||||||||||||||    
T  13755951 ttgaacataatatctttggtctatgagtgagatttatagatcttt 13755907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 168 - 601
Target Start/End: Complemental strand, 13331949 - 13331517
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    ||||||||||||||||||||||||| |||| |||||||| |||| |||||||||| ||||| ||||||||||||||  | |||||||||  | || ||||    
T  13331949 gaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgcccaggaatacatttttttc-aggaaagtagtaaactcacg 13331851  T
Q  268 ttctcccccattttccccc-acgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagttttattcccatggaatggaaacc-atg 365  Q
    ||||||||||||||||||| ||||||||||  |||| ||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||    
T  13331850 ttctcccccattttccccccacgttcaaccctttttccatccattctattcccatgaaatagcttgggaaagtttcattccca-ggaattgaaacccatg 13331752  T
Q  366 atcttcaataaaataccatttttatccttgtcattcccgccattctttttctctgattcccgctaaacattttcactcatcttcttctatataaaaaaca 465  Q
    ||||||||||||| |||||||||  ||||| ||||||||| |||||||  |||||||||||||||||||||||||| ||| || |||||||||||| | |    
T  13331751 atcttcaataaaaaaccatttttgcccttgccattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagata 13331654  T
Q  466 tcctatgatctttgtatgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccatt 565  Q
     || ||||||||||| ||||||||||||| ||||| |||  | ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||    
T  13331653 acccatgatctttgtgtgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccatt 13331554  T
Q  566 actcaacatagatttggtgattgg-tataatttctct 601  Q
    |||||||||||||||||||||||| || |||||||||    
T  13331553 actcaacatagatttggtgattggataaaatttctct 13331517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 168 - 601
Target Start/End: Complemental strand, 13342864 - 13342432
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    ||||||||||||||||||||||||| |||| |||||||| |||| |||||||||| ||||  ||||||||||||||  | |||||||||  | || ||||    
T  13342864 gaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacatttttttc-aggaaagtagtaaactcacg 13342766  T
Q  268 ttctcccccattttccccc-acgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagttttattcccatggaatggaaacc-atg 365  Q
    ||||||||||||||||||| ||||||||||  |||| ||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||    
T  13342765 ttctcccccattttccccccacgttcaaccctttttccatccattctattcccatgaaatagcttgggaaagtttcattccca-ggaattgaaacccatg 13342667  T
Q  366 atcttcaataaaataccatttttatccttgtcattcccgccattctttttctctgattcccgctaaacattttcactcatcttcttctatataaaaaaca 465  Q
    ||||||||||||| |||||||||  ||||||||||||||| |||||||  |||||||||||||||||||||||||| ||| || |||||||||||| | |    
T  13342666 atcttcaataaaaaaccatttttgcccttgtcattcccgctattcttt--ctctgattcccgctaaacattttcacccatgtttttctatataaaagata 13342569  T
Q  466 tcctatgatctttgtatgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccatt 565  Q
     || ||||||||||| ||||||||||||| ||||| |||  | ||||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||    
T  13342568 acccatgatctttgtgtgttcatcaactgcttgctgattgagtttttgatttcactcttctcttcaaggtaccatctaattttatctcaattcttccatt 13342469  T
Q  566 actcaacatagatttggtgattgg-tataatttctct 601  Q
    |||||||||||||||||||||||| || |||||||||    
T  13342468 actcaacatagatttggtgattggataaaatttctct 13342432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 8420949 - 8420823
Alignment:
Q  7 aaaagcatcaattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaannnnnnnaacatgtacaaatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||       ||||||||||||||    
T  8420949 aaaagcatcaattatttattaaaaagttgtatatttaatataaaagacacaagttataagataaacttaccattttaaa-ttttttaacatgtacaaatt 8420851  T
Q  107 tgttcatgatagaaaaaccatttagacc 134  Q
    ||||||||||||||||||||||||||||    
T  8420850 tgttcatgatagaaaaaccatttagacc 8420823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 655 - 750
Target Start/End: Complemental strand, 13330941 - 13330846
Alignment:
Q  655 aacagaatatctttggtctatgagtaggatttatagatctttacttcaaccctgtaattttcttccatttaaaataacaaattgaaatagtagata 750  Q
    |||| ||||||||||| ||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||||||||||||||||| |||||    
T  13330941 aacaaaatatctttggcctatgagtaggatttatagatctttcctgcaaccctgcaatttttttccatttaaaataacaaattgaaatagaagata 13330846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 655 - 750
Target Start/End: Complemental strand, 13341856 - 13341761
Alignment:
Q  655 aacagaatatctttggtctatgagtaggatttatagatctttacttcaaccctgtaattttcttccatttaaaataacaaattgaaatagtagata 750  Q
    |||| ||||||||||| ||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||||||||||||||||| |||||    
T  13341856 aacaaaatatctttggcctatgagtaggatttatagatctttcctgcaaccctgcaatttttttccatttaaaataacaaattgaaatagaagata 13341761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 12624705 - 12624776
Alignment:
Q  13 atcaattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    ||||||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||| |||||||||||||    
T  12624705 atcaattatttattaaaaacttgtatatttaatataaaatacacaagtt-taagacaaacttaccattttaaa 12624776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 7899594 - 7899524
Alignment:
Q  15 caattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    |||| ||||||||||| ||| |||||||||||| ||| | ||||||||||||| ||| |||||||||||||    
T  7899594 caataatttattaaaatgttatatatttaatataaaatatacaagttataagacaaacttaccattttaaa 7899524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 482 - 588
Target Start/End: Complemental strand, 33430336 - 33430229
Alignment:
Q  482 tgttcatcaactgtttgctaatttgggttttga-tttcactattcttttcaaagtaccatctaa-tttcatctcaattcttccattactcaacatagatt 579  Q
    |||||||||| ||||||||| ||||| |||||| |||||||||||| ||||| ||||||||||| |||  | | |||  |||||||||||||| ||||||    
T  33430336 tgttcatcaagtgtttgcta-tttggattttgaatttcactattctcttcaaggtaccatctaattttttttttaatcgttccattactcaacgtagatt 33430238  T
Q  580 tggtgattg 588  Q
    || ||||||    
T  33430237 tgatgattg 33430229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 19868184 - 19868254
Alignment:
Q  15 caattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    ||||||||||| |||||||| |||||||||||| ||| |||||||||  |||| ||| |||||||| ||||    
T  19868184 caattatttatcaaaaagttatatatttaatataaaatacacaagtttcaagacaaacttaccattctaaa 19868254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 2276745 - 2276791
Alignment:
Q  15 caattatttattaaaaagttgtatatttaatatgaaagacacaagtt 61  Q
    |||||||||||||||||||| | |||||||||| ||| |||||||||    
T  2276745 caattatttattaaaaagttatctatttaatataaaatacacaagtt 2276791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 4e-87; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 168 - 602
Target Start/End: Original strand, 26661223 - 26661646
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    ||||||||||||||||||||||||| ||||||||||||| |||| |  ||||||||||||| ||||||||||||||||| ||||||||     |||||||    
T  26661223 gaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttccc-aggaaagtcttttacccacg 26661321  T
Q  268 ttctcccccattttcccccacgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagttttattcccatggaatggaaaccatgat 367  Q
    |||||||          |||||||| ||| ||||||| |  |||  ||||| |||| ||||| ||||||||||||||| ||| |||||  ||||||||||    
T  26661322 ttctccc----------ccacgttctacccatttttcctgtctttcattccaatgagatagcatgggaaagttttatttccagggaataaaaaccatgat 26661411  T
Q  368 cttcaataaaataccatttttatccttgtcattcccgccattctttttctctgattcccgctaaacattttcactcatcttcttctatataaaaaacatc 467  Q
    || ||| ||||||||  || || ||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||  | |||| ||||||||  | |    
T  26661412 ctccaacaaaatacctcttctacccttgccattcccgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaac 26661511  T
Q  468 ctatgatctttgtatgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattac 567  Q
    | ||||||||||| ||| ||||||||| |||| |||| || ||||||||||||| |||| ||||| ||| ||||||||||||||  ||||||||||||||    
T  26661512 ccatgatctttgtgtgtgcatcaactgcttgccaattgggtttttgatttcactcttctgttcaaggtatcatctaatttcatcataattcttccattac 26661611  T
Q  568 tcaacatagatttggtgattggtataatttctctg 602  Q
    ||||||||||||||||||||| ||| | |||||||    
T  26661612 tcaacatagatttggtgattgatatcaattctctg 26661646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 482 - 588
Target Start/End: Original strand, 6049931 - 6050037
Alignment:
Q  482 tgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacatagatttg 581  Q
    ||||||||||||| |||||| ||||| | | ||||||||| |||| ||||| |||||||| |||||| | ||||||||||||||||||||||||||||||    
T  6049931 tgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 6050030  T
Q  582 gtgattg 588  Q
    |||||||    
T  6050031 gtgattg 6050037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 6049624 - 6049732
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    |||||||||||||||||| || ||| || |||||||||| |||| |  ||| |||||||||||||||||||||||| |||||||||| |   | ||||||    
T  6049624 gaatctaaggctggaattaaagattgctatgtttggtagatgggaaaaacaaaaatatgcctaggaatacattttt-cccaggaaagcagctcccccacg 6049722  T
Q  268 ttctccccca 277  Q
    ||||||||||    
T  6049723 ttctccccca 6049732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 15231904 - 15231971
Alignment:
Q  18 ttatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    |||||||||||||||||  |||||||||||||||  |||||||| ||||  ||| |||||| ||||||    
T  15231904 ttatttattaaaaagttacatatttaatatgaaatgcacaagttttaagtcaaagttaccactttaaa 15231971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 8e-79; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 168 - 602
Target Start/End: Complemental strand, 32718243 - 32717808
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    |||||||||| ||||||| || |||||||||||||||| ||||| |||||||||||||| |||||||| || ||||||| |||||||  |   |||||||    
T  32718243 gaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtctaggaatgcaattttccc-aggaaagccatctacccacg 32718145  T
Q  268 ttctcccccattt-tcccccacgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagttttattcccatggaatggaaa-ccatg 365  Q
    || |||||||||| | ||||||||||| ||| |||| |||||||| ||||||||||| || |||||||||||||||||||||| | |||||||| |||||    
T  32718144 ttttcccccatttcttccccacgttcacccttttttccatcccttttattcccatgagatggcttgggaaagttttattcccaggaaatggaaacccatg 32718045  T
Q  366 atcttcaataaaataccatttttatccttgtcattcccgccattctttttctctg--attcccgctaaacattttcactcatcttcttctatataaaaaa 463  Q
    ||||| ||||||||||||| |||  ||||| ||||||||| |   ||||||||||  ||||||||| ||  ||||||| |||  ||||||||| |||||     
T  32718044 atcttgaataaaataccatatttgcccttgccattcccgcta-aatttttctctgctattcccgct-aattttttcacccatgatcttctata-aaaaag 32717948  T
Q  464 catcctatgatctttgta-tgttcatcaactgtttgctaatttgggtttt-gatttcactattcttttcaaagtaccatctaatttcatctcaattcttc 561  Q
     | || || ||||||||| ||||||||||||| |||||  |||| ||||| ||||||||| |||| ||||| ||||||||||||||||| | ||||||||    
T  32717947 aaacccattatctttgtagtgttcatcaactgcttgct-gtttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttc 32717849  T
Q  562 cattactcaacatagatttggtgattggtataatttctctg 602  Q
    ||||||||||||||||||||||||||  ||| |||||||||    
T  32717848 cattactcaacatagatttggtgatttatatcatttctctg 32717808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 168 - 602
Target Start/End: Original strand, 10637351 - 10637786
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    |||||||||| ||||||| || |||||||||||||||| ||||| |||||||||||||| | |||||| || ||||||| |||||||  |   |||||||    
T  10637351 gaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatgcaattttccc-aggaaagccatctacccacg 10637449  T
Q  268 ttctcccccattt-tcccccacgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagttttattcccatggaatggaaa-ccatg 365  Q
    || |||||||||| | ||||||||||| ||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||| | |||||||| |||||    
T  10637450 ttttcccccatttcttccccacgttcacccttttttccatcccttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatg 10637549  T
Q  366 atcttcaataaaataccatttttatccttgtcattcccgccattctttttctctg--attcccgctaaacattttcactcatcttcttctatataaaaaa 463  Q
    | ||| ||||||||||||| |||  ||||| ||||||||| |   ||||||||||  ||||||||| ||  ||||||| |||  ||||||||| |||||     
T  10637550 aacttgaataaaataccatatttgcccttgccattcccgcta-aatttttctctgctattcccgct-aattttttcacccatgatcttctata-aaaaag 10637646  T
Q  464 catcctatgatctttgta-tgttcatcaactgtttgctaatttgggtttt-gatttcactattcttttcaaagtaccatctaatttcatctcaattcttc 561  Q
     | || || ||||||||| ||||||||||||| |||||  |||| ||||| ||||||||| |||| ||||| ||| ||||||||||||| | ||||||||    
T  10637647 aaacccattatctttgtagtgttcatcaactgcttgct-gtttgagttttggatttcactcttctcttcaaggtatcatctaatttcattttaattcttc 10637745  T
Q  562 cattactcaacatagatttggtgattggtataatttctctg 602  Q
    ||||||||||||||||||||||||||  ||| |||||||||    
T  10637746 cattactcaacatagatttggtgatttatatcatttctctg 10637786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 7393352 - 7393294
Alignment:
Q  15 caattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatt 73  Q
    |||||||||||||||||||| |||||||||||| ||| |||||||||| |||| |||||    
T  7393352 caattatttattaaaaagttatatatttaatataaaatacacaagttacaagacaaatt 7393294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 31133907 - 31133975
Alignment:
Q  16 aattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    ||||||||||||||||||| |||||||||||| ||| ||||| |||  ||||||||| ||||||||||||    
T  31133907 aattatttattaaaaagtt-tatatttaatataaaatacacaggtttcaagataaatataccattttaaa 31133975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 20514703 - 20514773
Alignment:
Q  15 caattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    |||||||||||||||||||| |||||||||||| |||   |||||||  |||| ||| |||||||||||||    
T  20514703 caattatttattaaaaagttatatatttaatataaaatgtacaagttccaagacaaacttaccattttaaa 20514773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 8e-73; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 168 - 602
Target Start/End: Original strand, 21481141 - 21481564
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    |||| |||||||||||||||||||| ||||||||||||| |||| |  |||||||||| || ||||||||||||||| | ||||||||     ||||| |    
T  21481141 gaatttaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatataccaaggaatacatttttctc-aggaaagtcttttacccatg 21481239  T
Q  268 ttctcccccattttcccccacgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagttttattcccatggaatggaaaccatgat 367  Q
    ||| |||||||          |||| ||| ||||||| |  ||| ||||||| ||| ||||| |||||||||||||||||||  ||||  ||||||||||    
T  21481240 ttcacccccat----------gttctacccatttttcctgtcttttattcccctgagatagcatgggaaagttttattcccagagaataaaaaccatgat 21481329  T
Q  368 cttcaataaaataccatttttatccttgtcattcccgccattctttttctctgattcccgctaaacattttcactcatcttcttctatataaaaaacatc 467  Q
    || ||| ||||||||  || || ||||| |||||| || ||||||||||||||||||||||||||||||||||| |||  | |||| ||||||||  | |    
T  21481330 ctccaacaaaatacctcttctacccttgccattcctgctattctttttctctgattcccgctaaacattttcacccatgatattctgtataaaaagaaac 21481429  T
Q  468 ctatgatctttgtatgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattac 567  Q
    | ||||||||||| ||| ||||||||  |||| |||| || ||||||||||||| |||| ||||| ||| ||||||||||||||  ||||||||||||||    
T  21481430 ccatgatctttgtgtgtgcatcaactacttgccaattgggtttttgatttcactcttctattcaaggtaacatctaatttcatcataattcttccattac 21481529  T
Q  568 tcaacatagatttggtgattggtataatttctctg 602  Q
    ||||||||||||||||||||| ||| | |||||||    
T  21481530 tcaacatagatttggtgattgatatcaattctctg 21481564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 168 - 401
Target Start/End: Original strand, 19700890 - 19701122
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    |||||||||||||||||| || |||||||||||||||| ||||| |||||||||||||| | ||||||||| ||||||| |||||||  |   |||||||    
T  19700890 gaatctaaggctggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtccaggaatacaattttccc-aggaaagccatctacccacg 19700988  T
Q  268 ttctcccccattt-tcccccacgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagttttattcccatggaatggaaa-ccatg 365  Q
    || ||||  |||| | ||||||||||| ||| |||| |||||||| |||||||| || ||||||||||||||||||||||||| | |||||||| |||||    
T  19700989 ttttccc--atttcttccccacgttcacccttttttccatcccttttattcccaagagatagcttgggaaagttttattcccaggaaatggaaacccatg 19701086  T
Q  366 atcttcaataaaataccatttttatccttgtcattc 401  Q
    ||||| ||||||||||||| |||  ||||| |||||    
T  19701087 atcttgaataaaataccatattttcccttgccattc 19701122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 470 - 602
Target Start/End: Original strand, 19701165 - 19701298
Alignment:
Q  470 atgatctttgta-tgttcatcaactgtttgctaatttgggtttt-gatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattac 567  Q
    |||||||||||| ||||||||||||| ||||| ||||| ||||| ||||||||| |||| ||||| ||||||||||||||||| | ||||||||||||||    
T  19701165 atgatctttgtagtgttcatcaactgcttgct-atttgagttttggatttcacttttctcttcaaggtaccatctaatttcattttaattcttccattac 19701263  T
Q  568 tcaacatagatttggtgattggtataatttctctg 602  Q
    |||||||||||||| |||||  ||| |||||||||    
T  19701264 tcaacatagatttgttgatttatatcatttctctg 19701298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 8e-70; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 168 - 602
Target Start/End: Original strand, 22893507 - 22893941
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    |||||||||| ||||||| || |||||||||||||||| ||||| |||||||||||||| | |||||| || |||  |||| |||||  |   ||||| |    
T  22893507 gaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtcaaggaatgcaattt--cccatgaaagccatctacccatg 22893604  T
Q  268 ttctcccccattt-tcccccacgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagttttattcccatggaatggaaa-ccatg 365  Q
    || |||||||||| | ||||||||||| ||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||| | |||||||| |||||    
T  22893605 ttttcccccatttcttccccacgttcacccttttttccatcccttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatg 22893704  T
Q  366 atcttcaataaaataccatttttatccttgtcattcccgccattctttttctctg--attcccgctaaacattttcactcatcttcttctatataaaaaa 463  Q
    ||||| ||||||||||||| |||  ||||| ||||||||| |   ||||||||||  ||||||||| ||  ||||||| |||  ||||||||| ||||      
T  22893705 atcttgaataaaataccatattttcccttgccattcccgcta-aatttttctctgctattcccgct-aattttttcacccatgatcttctata-aaaagg 22893801  T
Q  464 catcctatgatctttgta-tgttcatcaactgtttgctaatttgggtttt-gatttcactattcttttcaaagtaccatctaatttcatctcaattcttc 561  Q
     | || |||||||||||| ||||||||||||| |||||  |||| ||||| ||||||||| |||| ||||| ||| ||||||||||||| | ||||||||    
T  22893802 aaacccatgatctttgtagtgttcatcaactgcttgct-gtttgagttttggatttcactcttctcttcaaggtaacatctaatttcattttaattcttc 22893900  T
Q  562 cattactcaacatagatttggtgattggtataatttctctg 602  Q
    ||||||||||||||||||||||||||  ||| |||||||||    
T  22893901 cattactcaacatagatttggtgatttatatcatttctctg 22893941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 9516651 - 9516721
Alignment:
Q  15 caattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||| |||||||||||||    
T  9516651 caattatttattaaaaagttatatatttaatataaaatacacaagttataagagaaacttaccattttaaa 9516721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 482 - 588
Target Start/End: Original strand, 44306148 - 44306253
Alignment:
Q  482 tgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacatagatttg 581  Q
    ||||||||||||| |||||| ||||| | | ||||||||| |||| ||||| |||||||| |||| | | ||||||||||||||||||||||||||||||    
T  44306148 tgttcatcaactgcttgctattttggttctggatttcactcttctcttcaaggtaccatcaaatt-cttttcaattcttccattactcaacatagatttg 44306246  T
Q  582 gtgattg 588  Q
    || ||||    
T  44306247 gtcattg 44306253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 35438785 - 35438855
Alignment:
Q  15 caattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    ||||| |||||||||||||| |||||||||||| ||| |||||| |||||||||||| |||||||||||||    
T  35438785 caattgtttattaaaaagttatatatttaatataaaatacacaaattataagataaacttaccattttaaa 35438855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 44305841 - 44305949
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    |||||||||||||||||| || ||| ||||||||||||| |||| |  ||| ||||||||||| |||||||||||| |||||||||| |   | ||||||    
T  44305841 gaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaagaatacattttt-cccaggaaagcagctcccccacg 44305939  T
Q  268 ttctccccca 277  Q
    ||||||||||    
T  44305940 ttctccccca 44305949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 13241828 - 13241897
Alignment:
Q  16 aattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    |||||||||||||||| || |||||||||||||||| |||||||||| | || ||| |||||||||||||    
T  13241828 aattatttattaaaaaattatatatttaatatgaaatacacaagttacacgacaaacttaccattttaaa 13241897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 43909273 - 43909329
Alignment:
Q  25 ttaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattt 81  Q
    |||||||||| |||||||||||| ||| ||||||||||||||| ||| |||||||||    
T  43909273 ttaaaaagttatatatttaatataaaatacacaagttataagacaaacttaccattt 43909329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 24669006 - 24669067
Alignment:
Q  24 attaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    |||||||| || |||||||||||| |||  || ||||||||| |||||||||| ||||||||    
T  24669006 attaaaaaattatatatttaatataaaatgcataagttataatataaatttactattttaaa 24669067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 168 - 405
Target Start/End: Original strand, 9321 - 9559
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    |||||||||| ||||||| || |||||||||||||||||||||| |||||||||||||| | |||||| || ||||||| |||||||  |   |||||||    
T  9321 gaatctaaggttggaattaaacattcctttgtttggtaggtgggaaccacacaaatatgtccaggaatgcaattttccc-aggaaagccatctacccacg 9419  T
Q  268 ttctcccccattt-tcccccacgttcaacctatttttcatcccttctattcccatgaaatagcttgggaaagttttattcccatggaatggaaa-ccatg 365  Q
    || |||||||||| | ||||||||||| ||| | || |||||||| ||||||||||| ||||||||||||||||||||||||| | |||||||| |||||    
T  9420 ttttcccccatttcttccccacgttcaccctttgttccatcccttttattcccatgagatagcttgggaaagttttattcccaggaaatggaaacccatg 9519  T
Q  366 atcttcaataaaataccatttttatccttgtcattcccgc 405  Q
    ||||| ||||||||||||| |||  ||||| |||||||||    
T  9520 atcttgaataaaataccatattttcccttgccattcccgc 9559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 470 - 602
Target Start/End: Original strand, 9598 - 9731
Alignment:
Q  470 atgatctttgta-tgttcatcaactgtttgctaatttgggttttg-atttcactattcttttcaaagtaccatctaatttcatctcaattcttccattac 567  Q
    |||||||||||| ||||||||||||| ||| |  |||| |||||| |||||||| |||| ||||| ||||||||||||||||| | ||||||||||||||    
T  9598 atgatctttgtagtgttcatcaactgcttgttg-tttgagttttggatttcactcttctcttcaaggtaccatctaatttcattttaattcttccattac 9696  T
Q  568 tcaacatagatttggtgattggtataatttctctg 602  Q
    ||||||||||||||||||||  ||| |||||||||    
T  9697 tcaacatagatttggtgatttatatcatttctctg 9731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 2e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 482 - 588
Target Start/End: Complemental strand, 13893809 - 13893703
Alignment:
Q  482 tgttcatcaactgtttgctaatttgggttttgatttcactattcttttcaaagtaccatctaatttcatctcaattcttccattactcaacatagatttg 581  Q
    ||||||||||||| ||| || ||||| | | ||||||||| |||| ||||| |||||||| |||||| | ||||||||||||||||||||||||||||||    
T  13893809 tgttcatcaactgcttgttattttggttctggatttcactcttctcttcaaggtaccatcaaatttcttttcaattcttccattactcaacatagatttg 13893710  T
Q  582 gtgattg 588  Q
    |||||||    
T  13893709 gtgattg 13893703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 13894092 - 13893984
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtaggtgggtaccacacaaatatgcctaggaatacatttttccccaggaaagtaagacacccacg 267  Q
    |||||||||||||||||| || ||| ||||||||||||| |||| |  ||| |||||||||||||||||||||||| |||||||||| |   | ||||||    
T  13894092 gaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacattttt-cccaggaaagcagctcccccacg 13893994  T
Q  268 ttctccccca 277  Q
    ||||||||||    
T  13893993 ttctccccca 13893984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 1378085 - 1378158
Alignment:
Q  12 catcaattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    ||||||||||||||||||| ||| |||||||||||| |||   |||||||  ||||||||||||||||||||||    
T  1378085 catcaattatttattaaaatgttatatatttaatattaaatgtacaagtttcaagataaatttaccattttaaa 1378158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 51070504 - 51070434
Alignment:
Q  15 caattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    |||| ||||||||||||||| |||||||||||| ||| |||||||||| || | ||| |||||||||||||    
T  51070504 caatcatttattaaaaagttatatatttaatataaaatacacaagttacaaaacaaacttaccattttaaa 51070434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 2096941 - 2097008
Alignment:
Q  15 caattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccatttt 82  Q
    |||||||||||||||||||| |||||||||||| |||  ||||||||  || | ||| ||||||||||    
T  2096941 caattatttattaaaaagttatatatttaatataaaatgcacaagttccaatacaaacttaccatttt 2097008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 6875569 - 6875640
Alignment:
Q  13 atcaattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaa 84  Q
    |||||||||||||| ||||||| || ||||||||| ||| ||||||||| ||| | ||| | ||||||||||    
T  6875569 atcaattatttattgaaaagttataaatttaatataaaatacacaagttttaaaaaaaagtgaccattttaa 6875640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 42480038 - 42480000
Alignment:
Q  7 aaaagcatcaattatttattaaaaagttgtatatttaat 45  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  42480038 aaaaacatcaattatttattaaaaagttatatatttaat 42480000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 400 - 362
Alignment:
Q  168 gaatctaaggctggaattgaatattcctttgtttggtag 206  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  400 gaatctaaggctggaattgaatattgctttgtttggtag 362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 22526 - 22604
Alignment:
Q  7 aaaagcatcaattatttattaaaaagttgtatatttaatatgaaagacacaagttataagataaatttaccattttaaa 85  Q
    |||| ||||||||||||||||||||| | ||||||||| ||  || ||| ||||| ||||| ||| ||| |||||||||    
T  22526 aaaaacatcaattatttattaaaaagctatatatttaacatagaatacaaaagttctaagacaaaattaacattttaaa 22604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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