View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447-Insertion-7 (Length: 678)
Name: NF3447-Insertion-7
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447-Insertion-7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 655; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 8 - 678
Target Start/End: Original strand, 50554800 - 50555470
Alignment:
| Q |
8 |
acaatcccagcagcagtttttataacaagagagcagagagatcggttttccttgtaaaggcgccaaaatgcagtttcctacaaagtaaattgcacaagaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50554800 |
acaatcccagcagcagtttttataacaagagagcagagagatcggttttccttgtaaaggcgccaaaatgcagtttcctacaaagtaaattgcacaagaa |
50554899 |
T |
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| Q |
108 |
cttaagaagcagcatacacatccatgtacatcaaattgtatgaatgaatattttgggtgggatgaaaacaaaaatagagaatgaagcaatttgaaagtta |
207 |
Q |
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| T |
50554900 |
cttaagaagcagcatacacatccatgtacatcaaattgtatgaatgaatattttgggtgggatgaaaacaaaaatagagaatgaagcaatttgaaagtta |
50554999 |
T |
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| Q |
208 |
cctgcaaatatgcattcccctcgcctgatatactcattgcaatttttaatccttgctttaatttaaccttcacagatttacaaaaagaaataccatcaga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50555000 |
cctgcaaatatgcattcccctcgcctgatatactcattgcaatttttaatccttgctttaatttaaccttcacagatttacaaaaagaaataccatcaga |
50555099 |
T |
|
| Q |
308 |
ctggtaaaaagcagattaagatcacaaaaagtgcattctggtgattataaacttattttaggtgttttaagttcacaaaacttattcttgttttctatct |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50555100 |
ctggtaaaaagcagattaagatcacaaaaagtgcattctggtgattataaacttatttcaggtgttttaagttcacaaaacttattcttgttttctatct |
50555199 |
T |
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| Q |
408 |
ttaaataagatcctagtgttgtttatattttttgttttctcttgattgttgccgcttcaaccggaactgccacctccacataacatcattcagcgtcacc |
507 |
Q |
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| T |
50555200 |
ttaaataagatcccagtgttgtttatattttttgttttctcttgattgttgccgcttcaaccggaactgccacctccacataacattattcagcgtcacc |
50555299 |
T |
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| Q |
508 |
ctccactaccatcactgccacctggtacacgtcaatattgctgctgcttatattctccaccatagccatccagtaccttccacaattgctgtaggcacct |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50555300 |
ctccactaccatcactgccacctggtacacgtcaatattgctgctgcttatattctccaccatagccatccagtaccttccacaattgctgtaggcacct |
50555399 |
T |
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| Q |
608 |
tttgtcctttgttgctacaacaccctctaatatcctccactacagcaaggtaccttccaccataactgcct |
678 |
Q |
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| T |
50555400 |
tttgtcctttgttgctacaacaccctctaatgtcctccactacagcaaggtaccttccaccataactgcct |
50555470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 186 - 310
Target Start/End: Original strand, 29766257 - 29766381
Alignment:
| Q |
186 |
gaatgaagcaatttgaaagttacctgcaaatatgcattcccctcgcctgatatactcattgcaatttttaatccttgctttaatttaaccttcacagatt |
285 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||| ||||||||| |||| || |
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| T |
29766257 |
gaatgtagcaattccaaagttacctgcaaatatgcattcccctcaccagatatgctcattgcaattttcaatccttgctttagtttaacctttacagttt |
29766356 |
T |
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| Q |
286 |
tacaaaaagaaataccatcagactg |
310 |
Q |
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| T |
29766357 |
tgcaaaaagaaatactatcagactg |
29766381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 29766117 - 29766214
Alignment:
| Q |
8 |
acaatcccagcagcagtttttataacaagagagcagagagatcggttttccttgtaaaggcgccaaaatgcagtttcctacaaagtaaattgcacaag |
105 |
Q |
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|||||||| ||||||||||| |||||||| |||||||||||| |||||| ||||||||| |||||||| |||||||||||||||| |||||||||| |
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| T |
29766117 |
acaatcccggcagcagttttcataacaagggagcagagagataggttttgcttgtaaagacgccaaaactcagtttcctacaaagtttattgcacaag |
29766214 |
T |
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