View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3447-Insertion-8 (Length: 586)

Name: NF3447-Insertion-8
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3447-Insertion-8
NF3447-Insertion-8
[»] chr5 (2 HSPs)
chr5 (326-586)||(42578986-42579245)
chr5 (332-372)||(29290510-29290550)
[»] chr1 (4 HSPs)
chr1 (7-327)||(7114881-7115198)
chr1 (335-397)||(12461194-12461256)
chr1 (341-463)||(27645702-27645824)
chr1 (497-558)||(12461033-12461094)
[»] chr2 (2 HSPs)
chr2 (326-573)||(646131-646378)
chr2 (332-372)||(4019557-4019597)
[»] chr6 (2 HSPs)
chr6 (335-397)||(16860848-16860910)
chr6 (497-558)||(16861010-16861071)
[»] scaffold0703 (2 HSPs)
scaffold0703 (335-397)||(2086-2148)
scaffold0703 (497-558)||(1925-1986)
[»] chr8 (1 HSPs)
chr8 (332-372)||(35611209-35611249)
[»] chr3 (1 HSPs)
chr3 (326-420)||(17401516-17401610)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 326 - 586
Target Start/End: Complemental strand, 42579245 - 42578986
Alignment:
Q  326 aatgtactctacaaaattatctcaaaagtccttgcaaaccgtcttcgtccgttgatcaataaatggatatctccggagcaggcagcctttgtccactcaa 425  Q
    ||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  42579245 aatgtcctctacaaaattattttaaaagttcttgcaaaccgtcttcgtccgttgatcaataaatggatatctccagagcaggcagcctttttccactcaa 42579146  T
Q  426 gagccatcatggacaatgctctaacggcttttgaaatccttcacaccatgcgctgcaaaaataaggggaacaaaggtgagattgccttgaaacttgatat 525  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  42579145 gatccatcatggacaatgctctaacggcatttgaaatccttcacaccatgcgctgcaaaactaa-gggaacaaaggtgagattgccttgaaacttgatat 42579047  T
Q  526 atccaaagccttcgatagcgtaagctggtcttacttacaagcaattcttttcaagatggga 586  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42579046 atccaaagtcttcgatagcgtaagttggtcttacttacaagcaattcttttcaagatggga 42578986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 29290510 - 29290550
Alignment:
Q  332 ctctacaaaattatctcaaaagtccttgcaaaccgtcttcg 372  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  29290510 ctctacaaaattatctctaaagtccttgctaaccgtcttcg 29290550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 327
Target Start/End: Original strand, 7114881 - 7115198
Alignment:
Q  7 acatacgaagtcattacttgcataattaatagcaactaaaagaaaaagtcattgtttgcagtgatatgacaaaagtcattttggtagagatattttcttg 106  Q
    ||||| |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  7114881 acataggaagtcattacttgcataattaatagcaacaaaaa--aaaagtcattgtttgcagtgatatgacaaaagttattttggcagagatattttcttg 7114978  T
Q  107 aagataatattctttaagggtctcgtaagatagagacgattcaatttgtcatcaaacatactaaagaaatgaaa-tttaacgactttaattctttggatc 205  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7114979 aagataatattctttaagggtctcataagatagagacgattcaatttgtcatcaaacatactaaagaaatgaaattttaacgactttaattctttggatc 7115078  T
Q  206 cctcagact--aaaaaaaaactctttggatcccctgtnnnnnnnnnnnnnnnnnnnctctttggatccaatgttactagtataaaaatgttttccaaata 303  Q
    ||||| |||  ||||||||||||||||||||||||||                   |||||||||||||||||||||||||||||||||||||||| |||    
T  7115079 cctcatacttaaaaaaaaaactctttggatcccctgt----caaaaaaaaaaaaaactctttggatccaatgttactagtataaaaatgttttccacata 7115174  T
Q  304 ataaataaaactatttccataaaa 327  Q
    |||||||||||||||||| |||||    
T  7115175 ataaataaaactatttccttaaaa 7115198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 12461256 - 12461194
Alignment:
Q  335 tacaaaattatctcaaaagtccttgcaaaccgtcttcgtccgttgatcaataaatggatatct 397  Q
    |||||||||||||| || |||||||| |||||||||||||||||||| | ||||| |||||||    
T  12461256 tacaaaattatctcgaaggtccttgccaaccgtcttcgtccgttgattagtaaatagatatct 12461194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 463
Target Start/End: Complemental strand, 27645824 - 27645702
Alignment:
Q  341 attatctcaaaagtccttgcaaaccgtcttcgtccgttgatcaataaatggatatctccggagcaggcagcctttgtccactcaagagccatcatggaca 440  Q
    ||||||||||| ||  | ||||| |||||||| || ||||||||||| ||||||||||  || |||||||| || || |||||  |  | |||||||| |    
T  27645824 attatctcaaaggttttagcaaatcgtcttcggcccttgatcaataactggatatctcatgaacaggcagcattcgttcactcccgctctatcatggata 27645725  T
Q  441 atgctctaacggcttttgaaatc 463  Q
    ||||| ||||||| |||||||||    
T  27645724 atgctttaacggcctttgaaatc 27645702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 558
Target Start/End: Complemental strand, 12461094 - 12461033
Alignment:
Q  497 aaaggtgagattgccttgaaacttgatatatccaaagccttcgatagcgtaagctggtctta 558  Q
    ||||||||| |||| ||||||||||||||||||||||| || || || || |||||||||||    
T  12461094 aaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgtcagctggtctta 12461033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 326 - 573
Target Start/End: Original strand, 646131 - 646378
Alignment:
Q  326 aatgtactctacaaaattatctcaaaagtccttgcaaaccgtcttcgtccgttgatcaataaatggatatctccggagcaggcagcctttgtccactcaa 425  Q
    ||||| || ||||||| |||||| ||||| || || || ||||| || |||||||| | ||| |||||||| |||||||||||||| ||  | ||||||     
T  646131 aatgtcctttacaaaactatctccaaagtgctcgctaatcgtctccgaccgttgattagtaattggatatcaccggagcaggcagctttcattcactcac 646230  T
Q  426 gagccatcatggacaatgctctaacggcttttgaaatccttcacaccatgcgctgcaaaaataaggggaacaaaggtgagattgccttgaaacttgatat 525  Q
    |  |||||||||| |||||||| || |||| |||||| ||||||  |||||  |||||||  || || ||    || ||  |||||||||| || |||||    
T  646231 gctccatcatggataatgctctcacagcttatgaaattcttcaccacatgcattgcaaaacaaaaggtaaagctggcgaagttgccttgaagctcgatat 646330  T
Q  526 atccaaagccttcgatagcgtaagctggtcttacttacaagcaattct 573  Q
    ||| |||||||  ||||| ||||| ||||||||  || ||||||||||    
T  646331 atcaaaagcctgtgatagtgtaagttggtcttatctataagcaattct 646378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 4019597 - 4019557
Alignment:
Q  332 ctctacaaaattatctcaaaagtccttgcaaaccgtcttcg 372  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  4019597 ctctacaaaattatctctaaagtccttgctaaccgtcttcg 4019557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 397
Target Start/End: Original strand, 16860848 - 16860910
Alignment:
Q  335 tacaaaattatctcaaaagtccttgcaaaccgtcttcgtccgttgatcaataaatggatatct 397  Q
    |||||||||||||| || |||||||| |||||||||||||||||||| | |||||||||||||    
T  16860848 tacaaaattatctcgaaggtccttgccaaccgtcttcgtccgttgattagtaaatggatatct 16860910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 558
Target Start/End: Original strand, 16861010 - 16861071
Alignment:
Q  497 aaaggtgagattgccttgaaacttgatatatccaaagccttcgatagcgtaagctggtctta 558  Q
    ||||||||| |||| ||||||||||| ||||||||||| || || || || |||||||||||    
T  16861010 aaaggtgaggttgctttgaaacttgacatatccaaagcatttgacagtgtcagctggtctta 16861071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 2148 - 2086
Alignment:
Q  335 tacaaaattatctcaaaagtccttgcaaaccgtcttcgtccgttgatcaataaatggatatct 397  Q
    |||||||||||||| || |||||||| |||||||||||||||||||| | ||||| |||||||    
T  2148 tacaaaattatctcgaaggtccttgccaaccgtcttcgtccgttgattagtaaatagatatct 2086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 558
Target Start/End: Complemental strand, 1986 - 1925
Alignment:
Q  497 aaaggtgagattgccttgaaacttgatatatccaaagccttcgatagcgtaagctggtctta 558  Q
    ||||||||| |||| ||||||||||||||||||||||| || || || || |||||||||||    
T  1986 aaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgtcagctggtctta 1925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 35611209 - 35611249
Alignment:
Q  332 ctctacaaaattatctcaaaagtccttgcaaaccgtcttcg 372  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  35611209 ctctacaaaattatctctaaagtccttgctaaccgtcttcg 35611249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 420
Target Start/End: Complemental strand, 17401610 - 17401516
Alignment:
Q  326 aatgtactctacaaaattatctcaaaagtccttgcaaaccgtcttcgtccgttgatcaataaatggatatctccggagcaggcagcctttgtcca 420  Q
    ||||| ||||||||||| ||  ||||   |||||| ||||| ||||||||  | || ||||| |||||||||||| |||||||||| ||||||||    
T  17401610 aatgtcctctacaaaatcattgcaaagtaccttgccaaccgccttcgtcctcttatgaataagtggatatctccgaagcaggcagcgtttgtcca 17401516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University