View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3447-Insertion-9 (Length: 576)

Name: NF3447-Insertion-9
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3447-Insertion-9
NF3447-Insertion-9
[»] chr7 (4 HSPs)
chr7 (8-282)||(20622080-20622354)
chr7 (115-282)||(20603168-20603335)
chr7 (151-187)||(20603122-20603158)
chr7 (8-40)||(20603091-20603123)
[»] chr5 (7 HSPs)
chr5 (110-278)||(25834374-25834542)
chr5 (446-521)||(31159112-31159187)
chr5 (442-538)||(25832160-25832256)
chr5 (445-521)||(41352130-41352206)
chr5 (452-515)||(31198486-31198549)
chr5 (179-247)||(31161484-31161552)
chr5 (189-246)||(31201289-31201346)
[»] chr3 (1 HSPs)
chr3 (445-521)||(25792051-25792127)
[»] chr6 (3 HSPs)
chr6 (445-538)||(14267622-14267715)
chr6 (446-538)||(2326253-2326345)
chr6 (122-261)||(14265062-14265201)
[»] chr4 (1 HSPs)
chr4 (117-166)||(17182425-17182474)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 20622080 - 20622354
Alignment:
Q  8 caaacatgtcctcttttctgttcaaactatacaatagaaaataaataatacaagtggtcatttcgagtgaaagagaacaataatatgttagtgagaagtt 107  Q
    ||||| || ||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||||||||||||||    
T  20622080 caaacttgccctcttttctgttcaaacagtacaatagaaaataaataatgcaagtggtcatttcgagtgaaagaaagcaattatatgttagtgagaagtt 20622179  T
Q  108 aattttgatattttataaatacctcgctggaaacaatttcatccattagcctgcaaagagttgcagcggcgttaacaattcttggctcatttgataccca 207  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20622180 aattttgatatttcataaatacctcgttggaaacaatttcatccattagcctgcaaagagttgcagcggcgttaacaattcttggctcatttgataccca 20622279  T
Q  208 attgaagatctcctttgtggctatatcacccatgccaatgtaagaggttaatatcagtaaagggtaagcacctga 282  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  20622280 attgaagatctcctttgtggctatgtcacccataccaatgtaagaggttaatatcagcaaagggtaagcacctga 20622354  T

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Target: chr7; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 115 - 282
Target Start/End: Original strand, 20603168 - 20603335
Alignment:
Q  115 atattttataaatacctcgctggaaacaatttcatccattagcctgcaaagagttgcagcggcgttaacaattcttggctcatttgatacccaattgaag 214  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20603168 atattttataaatacctcactggaaacaatttcatccattagcctgcaaagagttgcagcggcgttaacaattcttggctcatttgatacccaaatgaag 20603267  T
Q  215 atctcctttgtggctatatcacccatgccaatgtaagaggttaatatcagtaaagggtaagcacctga 282  Q
    ||||||||||||| ||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  20603268 atctcctttgtggatatgtcacccataccaatgtaagaagttaatatcagcaaagggtaagcacctga 20603335  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 20603122 - 20603158
Alignment:
Q  151 cattagcctgcaaagagttgcagcggcgttaacaatt 187  Q
    |||||||||||||||||||||||||||||||||||||    
T  20603122 cattagcctgcaaagagttgcagcggcgttaacaatt 20603158  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 20603091 - 20603123
Alignment:
Q  8 caaacatgtcctcttttctgttcaaactataca 40  Q
    |||||||||||||||||||||||||||| ||||    
T  20603091 caaacatgtcctcttttctgttcaaactgtaca 20603123  T

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Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 110 - 278
Target Start/End: Complemental strand, 25834542 - 25834374
Alignment:
Q  110 ttttgatattttataaatacctcgctggaaacaatttcatccattagcctgcaaagagttgcagcggcgttaacaattcttggctcatttgatacccaat 209  Q
    ||||||||| || |||||||||| ||||| |||||||||||||||| |||||||||| | || |||||  |||||||| |||| ||||||| ||||||||    
T  25834542 ttttgatatattttaaatacctcactggagacaatttcatccattaacctgcaaagattggctgcggcactaacaatttttgggtcatttgttacccaat 25834443  T
Q  210 tgaagatctcctttgtggctatatcacccatgccaatgtaagaggttaatatcagtaaagggtaagcac 278  Q
    ||||||| | || |||||   | || ||||| ||||||||||| ||||||||||  |||| ||||||||    
T  25834442 tgaagatgttctctgtggtattttctcccatcccaatgtaagaagttaatatcaacaaagtgtaagcac 25834374  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 446 - 521
Target Start/End: Complemental strand, 31159187 - 31159112
Alignment:
Q  446 atacttggtgaaacatgaagtccttgttgcctgaacaccctaaatagcatagcaagagagcaaaggttgtcttcaa 521  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  31159187 atacttggtgaaacatgaagtccttgttgcctcaacaacctaaatagcacagcaagagagcaaaggttgtcttcaa 31159112  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 25832256 - 25832160
Alignment:
Q  442 atatatacttggtgaaacatgaagtccttgttgcctgaacaccctaaatagcatagcaagagagcaaaggttgtcttcaagctttatttctccattt 538  Q
    |||||||||||||||||||| || |||||||||||| || ||||||||||||| ||| |||||| ||||| |||||| |||  ||||||||||||||    
T  25832256 atatatacttggtgaaacataaaatccttgttgcctcaaaaccctaaatagcacagcgagagagtaaaggctgtctttaagaattatttctccattt 25832160  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 445 - 521
Target Start/End: Original strand, 41352130 - 41352206
Alignment:
Q  445 tatacttggtgaaacatgaagtccttgttgcctgaacaccctaaatagcatagcaagagagcaaaggttgtcttcaa 521  Q
    ||||||||||||||| |||| |||||||||||| |||| ||||||||||| |||||||||||||| |||||||||||    
T  41352130 tatacttggtgaaacgtgaaatccttgttgcctcaacaacctaaatagcacagcaagagagcaaatgttgtcttcaa 41352206  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 452 - 515
Target Start/End: Complemental strand, 31198549 - 31198486
Alignment:
Q  452 ggtgaaacatgaagtccttgttgcctgaacaccctaaatagcatagcaagagagcaaaggttgt 515  Q
    |||||||| ||||||||||||||||| | || ||||||||||| ||||||||||||||||||||    
T  31198549 ggtgaaacgtgaagtccttgttgcctcagcaacctaaatagcacagcaagagagcaaaggttgt 31198486  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 31161552 - 31161484
Alignment:
Q  179 ttaacaattcttggctcatttgatacccaattgaagatctcctttgtggctatatcacccatgccaatg 247  Q
    ||||||||| |||  |||||||||||||| |||| |||||||| ||||| ||| || ||||||||||||    
T  31161552 ttaacaatttttgtttcatttgatacccacttgatgatctcctctgtggttatgtctcccatgccaatg 31161484  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 31201346 - 31201289
Alignment:
Q  189 ttggctcatttgatacccaattgaagatctcctttgtggctatatcacccatgccaat 246  Q
    |||| |||||||||||||| |||||||| |||| ||||||||| || ||||| |||||    
T  31201346 ttggatcatttgatacccacttgaagatgtcctctgtggctatgtctcccattccaat 31201289  T

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Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 445 - 521
Target Start/End: Complemental strand, 25792127 - 25792051
Alignment:
Q  445 tatacttggtgaaacatgaagtccttgttgcctgaacaccctaaatagcatagcaagagagcaaaggttgtcttcaa 521  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  25792127 tatacttggtgaaacgtgaagtccttgttgcctcaacaacctaaatagcacagcaagagagcaaaggttgtcttcaa 25792051  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 538
Target Start/End: Original strand, 14267622 - 14267715
Alignment:
Q  445 tatacttggtgaaacatgaagtccttgttgcctgaacaccctaaatagcatagcaagagagcaaaggttgtcttcaagctttatttctccattt 538  Q
    |||||| |||||||| | || |||||||||||| |||||||||||||||| |||||||||  ||||||||||||||||  ||| ||||||||||    
T  14267622 tatactcggtgaaacgtaaaatccttgttgcctcaacaccctaaatagcacagcaagagaaaaaaggttgtcttcaagaattacttctccattt 14267715  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 446 - 538
Target Start/End: Complemental strand, 2326345 - 2326253
Alignment:
Q  446 atacttggtgaaacatgaagtccttgttgcctgaacaccctaaatagcatagcaagagagcaaaggttgtcttcaagctttatttctccattt 538  Q
    ||||| ||||| ||||||| |||||||||||| |||| ||| ||||| | || ||||| ||||||||||||||||||| ||||||||||||||    
T  2326345 atactgggtgacacatgaaatccttgttgcctcaacagcctgaatagaacagaaagagtgcaaaggttgtcttcaagcgttatttctccattt 2326253  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 122 - 261
Target Start/End: Original strand, 14265062 - 14265201
Alignment:
Q  122 ataaatacctcgctggaaacaatttcatccattagcctgcaaagagttgcagcggcgttaacaattcttggctcatttgatacccaattgaagatctcct 221  Q
    ||||||||||| ||||| |||||||||||||| | ||| || | ||||||||| || ||| ||||  |||||||||| | || |||||||||||| | ||    
T  14265062 ataaatacctcactggacacaatttcatccatcaccctacagatagttgcagcagcattagcaataattggctcattcgttaaccaattgaagatgttct 14265161  T
Q  222 ttgtggctatatcacccatgccaatgtaagaggttaatat 261  Q
     | || || | || ||||||||||||||||| ||||||||    
T  14265162 ctatgactgtgtctcccatgccaatgtaagaagttaatat 14265201  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 17182474 - 17182425
Alignment:
Q  117 attttataaatacctcgctggaaacaatttcatccattagcctgcaaaga 166  Q
    |||||||  ||||||||||||| ||||| |||||||||||||| ||||||    
T  17182474 attttatgtatacctcgctggacacaatgtcatccattagcctacaaaga 17182425  T

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