View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3447R-Insertion-3 (Length: 296)

Name: NF3447R-Insertion-3
Description: NF3447R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3447R-Insertion-3
NF3447R-Insertion-3
[»] chr2 (1 HSPs)
chr2 (8-296)||(38090231-38090520)


Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 38090520 - 38090231
Alignment:
Q  8 atcatcgatggtcattggtccaattatacatttttgcactccaatattggcaatcattgccctaattatgcataatcgagaaatttattttcagttcgaa 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38090520 atcatcgatggtcattgctccaattatacatttttgcactccaatattgggaatcattgccctaattatgcataatcgacaaatttattttcagttcgaa 38090421  T
Q  108 aatttctctcttgcttctctgtgctcccttgatatctattttccccaacagctcaac-aaatccaattttgccattaatgtattattccttgggctatta 206  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38090420 aatttctctcttgcttctctgtgctcccttaatatctattttcctcaacagctcaacaaaatccaattttgccattaatgtattattccttgggctatta 38090321  T
Q  207 ttatggataattggatcataacattactcttgattgaagcaaacctaaatatccgcggttttggtaatacatacactaaatccgcagttc 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38090320 ttatggataattggatcataacattactcttgattgaagcaaacctaaatatccgcggttttggtaatacagacactaaatccgcagttc 38090231  T

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