View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3447R-Insertion-8 (Length: 1005)
Name: NF3447R-Insertion-8
Description: NF3447R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447R-Insertion-8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 896; Significance: 0; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 896; E-Value: 0
Query Start/End: Original strand, 9 - 936
Target Start/End: Complemental strand, 8691733 - 8690805
Alignment:
| Q |
9 |
gatgtgaccactttcagaatcataaaatcctgagttcgataaagatacttcgttctcattttcagagattgaaggctggtatgttgagaaaggaaagtaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8691733 |
gatgtgaccactttcagaatcataaaatcctgagttcgataaagatacttcgttctcattttcagagattgaaggctggtatgttgagaaaggaaagtaa |
8691634 |
T |
|
| Q |
109 |
ttttcggcctgatgaggttcctgaaacattggttccatattcttttcaagcaaggtaccacttattacctgaaacaaataacaaacaagtctaagttcta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8691633 |
ttttcggcctgatgaggttcctgaaacattggttccatattcttttcaagcaaggtaccacttattacctgaaacaaataacaaacaagtctaagttcta |
8691534 |
T |
|
| Q |
209 |
acttctaagtatgtttcatgtaagaaaggtttaaaattaaaactttgttttcaaaatttctattgtcatttatcaagaatgaaatccttacatcaggaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8691533 |
acttctaagtatgtttcatgtaagaaaggtttaaaattaaaactttgttttcaaaatttctattgtcatttatcaagaatgaaatccttacatcaggaat |
8691434 |
T |
|
| Q |
309 |
tccttcaactgtttcttgattttcgtgatcggaactcatgtgtcgactaggctccccttcatcacatatcattctatcaatttcctcttcagcttttttc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8691433 |
tccttcaactgtttcttgattttcgtgatcggaactcatgtgtcgactaggctccccttcatcacatatcattctatcaatttcctcttcagcttttttc |
8691334 |
T |
|
| Q |
409 |
tcagctttcttcatcaagcgacacaaaacaaaagtcctctacaaaattttggaggataatcaacannnnnnnctgaaaaaactcataccatacttatttc |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8691333 |
tcagctttcttcatcaagcgacacaaaacaaaagtcctctacaaaattttggaggataatcaacatttttttctgaaaaaactcataccatacttatttc |
8691234 |
T |
|
| Q |
509 |
aaagttaaaagtttaaacattgttgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccag |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8691233 |
aaagttaaaagtttaaacattgttgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccag |
8691134 |
T |
|
| Q |
609 |
gaacacaaccattatagaacacaagtgttttctttatcccaataacattgtcagtgcctctaaccttaatcttacggtcaagaccagtggctttccagta |
708 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8691133 |
gaacacaaccattatagaacacaagtgttttttttatcccaataacattgtcagtgcctctaaccttaatcttacggtcaagaccagtggctttccagta |
8691034 |
T |
|
| Q |
709 |
tccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaa |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8691033 |
tccacactgtgtccttctgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaa |
8690934 |
T |
|
| Q |
809 |
caagctg-aaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaacttgcata |
907 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8690933 |
caagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaacttgcata |
8690834 |
T |
|
| Q |
908 |
catcaacttcagctataacattgttgaca |
936 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8690833 |
catcaacttcagctataacattgttgaca |
8690805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 219 - 461
Target Start/End: Complemental strand, 8706184 - 8705944
Alignment:
| Q |
219 |
atgtttcatgtaagaaaggtttaaaattaaaactttgttttcaaaatttctattgtcatttatcaagaatgaaatccttacatcaggaattccttcaact |
318 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
8706184 |
atgtttcatgta-gaaaggcttaaatccaaaactttgttctcaaaatttctata-tcatttatcaaggatgaactccttacatcaggaattccttcaaaa |
8706087 |
T |
|
| Q |
319 |
gtttcttgattttcgtgatcggaactcatgtgtcgactaggctccccttcatcacatatcattctatcaatttcctcttcagcttttttctcagctttct |
418 |
Q |
| |
|
|||||||| |||| || || ||||||||||||| ||| ||||||||||||||| ||| | ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
8706086 |
atttcttgactttcatggtcagaactcatgtgtctacttggctccccttcatcatgtatatctgcttcagcttccttttcagcttttttctcagctttct |
8705987 |
T |
|
| Q |
419 |
tcatcaagcgacacaaaacaaaagtcctctacaaaattttgga |
461 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8705986 |
tcatcaagcgacataaaacaaaagtcctctacaaaattttgga |
8705944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 531 - 932
Target Start/End: Complemental strand, 8705491 - 8705081
Alignment:
| Q |
531 |
ttgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccaggaacacaaccattatagaacac |
630 |
Q |
| |
|
|||||||||||||||||| || ||| | |||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| | || |
|
|
| T |
8705491 |
ttgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaac |
8705392 |
T |
|
| Q |
631 |
aagtgttttctttatcccaataacattgtcagtgcctctaaccttaatcttacggtcaagaccagtggctttccagtatccacactgtgtccttctgtta |
730 |
Q |
| |
|
||| || ||||| |||||||||| ||| | | || |||||||||||||| ||||| |||||| |||||||| | ||| | ||| | || ||| |
|
|
| T |
8705391 |
aagagtcttcttaatcccaataatattattgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctctta |
8705292 |
T |
|
| Q |
731 |
aaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctg-aaaagatcaaaaac |
829 |
Q |
| |
|
||||||||||| || || || || ||||| |||||| || ||||||||||| || |||| ||||||| | ||| |||||| ||||||| |||||| |
|
|
| T |
8705291 |
aaccttttactcttggcatacttataatcaataggacacaaaaaaaaccattctgggtcatctgattttacaaccgaaaaagctgaaaaagatgaaaaac |
8705192 |
T |
|
| Q |
830 |
attagaaagattgcatttttgtgagaaaataatgatggg---gtttg-----ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagct |
921 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||||| ||| ||||| ||||||||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
8705191 |
attaaaaaggttgcatttttatgagaaaataatgaagggtttgtttgtttttttacctggtaagtcccaaggttcatagttgcatacatcaacttcagct |
8705092 |
T |
|
| Q |
922 |
ataacattgtt |
932 |
Q |
| |
|
||||||||||| |
|
|
| T |
8705091 |
ataacattgtt |
8705081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 279 - 457
Target Start/End: Complemental strand, 8744745 - 8744567
Alignment:
| Q |
279 |
tatcaagaatgaaatccttacatcaggaattccttcaactgtttcttgattttcgtgatcggaactcatgtgtcgactaggctccccttcatcacatatc |
378 |
Q |
| |
|
||||||| ||||| | ||||||| | ||||||||| | ||||||||||||||||| | || |||||||||| ||| | ||||||| ||||||||||| |
|
|
| T |
8744745 |
tatcaaggatgaacttcttacatttgaaattccttctaatgtttcttgattttcgtagtgagagctcatgtgtctacttgactcccctacatcacatatc |
8744646 |
T |
|
| Q |
379 |
attctatcaatttcctcttcagcttttttctcagctttcttcatcaagcgacacaaaacaaaagtcctctacaaaattt |
457 |
Q |
| |
|
||| |||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8744645 |
attgtatccaattcctcttcagtatttttctcagctttcttcatcaagcgacataaaacaaaagtcctctacaaaattt |
8744567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 531 - 848
Target Start/End: Original strand, 14372237 - 14372554
Alignment:
| Q |
531 |
ttgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccaggaacacaaccattatagaacac |
630 |
Q |
| |
|
||||||||||||||||||||| ||| | |||||||| | |||||||||||||||||||| | ||||||||||||||||||||| |||||||||| | || |
|
|
| T |
14372237 |
ttgtaacaaaacaaacctggt-atcttcaaaggtggtatcatgatattcatgaatcacccggctgcttttaacaccaggaacacgaccattatagtaaac |
14372335 |
T |
|
| Q |
631 |
aagtgttttctttatcccaataacattgtcagtgcctctaaccttaatcttacggtcaagaccagtggctttccagtatccacactgtgtccttctgtta |
730 |
Q |
| |
|
||| |||||||| |||||||||| ||| | | || |||||||||||||| ||||| ||||| |||||||| | ||| | ||| | || ||| |
|
|
| T |
14372336 |
aagagttttcttaatcccaataatattattgctacccctaaccttaatcttccggtcctttccagtagctttccaaaaaccattttttgttgtcctttta |
14372435 |
T |
|
| Q |
731 |
aaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctg-aaaagatcaaaaac |
829 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||| |||||||||||||| || |||| ||||||| || |||||||||| ||||||| || ||| |
|
|
| T |
14372436 |
aaccttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaagatgaagaac |
14372535 |
T |
|
| Q |
830 |
attagaaagattgcatttt |
848 |
Q |
| |
|
|||| |||| ||||||||| |
|
|
| T |
14372536 |
attaaaaaggttgcatttt |
14372554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 355 - 473
Target Start/End: Complemental strand, 8723378 - 8723260
Alignment:
| Q |
355 |
ctaggctccccttcatcacatatcattctatcaatttcctcttcagcttttttctcagctttcttcatcaagcgacacaaaacaaaagtcctctacaaaa |
454 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||||||||| ||||| |||| ||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8723378 |
ctaggctccccttcatcacacatcattgtatcattttcctcttcgccttttatctcggcttttttcatcaagcgacataaaacaaaagtcctctacaaaa |
8723279 |
T |
|
| Q |
455 |
ttttggaggataatcaaca |
473 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
8723278 |
ttttggagcgtaatcaaca |
8723260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 279 - 473
Target Start/End: Complemental strand, 8724904 - 8724711
Alignment:
| Q |
279 |
tatcaagaatgaaatccttacatcaggaattccttcaactgtttcttgattttcgtgatcggaactcatgtgtcgactaggctccccttcatcacatatc |
378 |
Q |
| |
|
||||||| ||||| | |||||||| | |||||||| | |||||||||| ||||||| | ||||||||||||| ||| | ||||||||| ||||||||| |
|
|
| T |
8724904 |
tatcaaggatgaactgcttacatctgaaattccttgagctgtttcttggttttcgtagtaagaactcatgtgtctactcgactccccttcgtcacatatc |
8724805 |
T |
|
| Q |
379 |
attctatcaatttcctcttcagcttttttctcagctttcttcatcaagcgacacaaaacaaaagtcctctacaaaattttggaggataatcaaca |
473 |
Q |
| |
|
||| |||| | |||||||| | ||||||||| ||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
8724804 |
attgtatccagctcctcttcggtatttttctcaaatttcttcatcaggcgacataaaacaaaagtcctctacaaaa-tttggatgataatcaaca |
8724711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 728 - 932
Target Start/End: Complemental strand, 8740370 - 8740157
Alignment:
| Q |
728 |
ttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaa-gatcaaa |
826 |
Q |
| |
|
|||||||||||||| ||||| || ||||| || |||||| |||||||||||||| | |||| |||||||||| |||| ||||||||| ||| ||| |
|
|
| T |
8740370 |
ttaaaccttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattttatcactgaacgagctgaaaaagatgaaa |
8740271 |
T |
|
| Q |
827 |
aacattagaaagattgcatttttgtgagaaaataatgatggggtttgtt--------acctggtaaatcccaaggttcgaacttgcatacatcaacttca |
918 |
Q |
| |
|
||||||| ||| ||| ||| | | ||||||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
8740270 |
aacattaacaaggttgaattactttaagaaaataatgatagggtttgtttggtttttacctggtaagtcccaaggttcgtacttgcatacatcaacttca |
8740171 |
T |
|
| Q |
919 |
gctataacattgtt |
932 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
8740170 |
gctataacattgtt |
8740157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 405 - 470
Target Start/End: Original strand, 14371953 - 14372018
Alignment:
| Q |
405 |
tttctcagctttcttcatcaagcgacacaaaacaaaagtcctctacaaaattttggaggataatca |
470 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
14371953 |
tttctcagctttcttcatcaagcgacataaaacaaaagtcctctacaaaatttcggatgataatca |
14372018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 360 - 471
Target Start/End: Complemental strand, 8740023 - 8739912
Alignment:
| Q |
360 |
ctccccttcatcacatatcattctatcaatttcctcttcagcttttttctcagctttcttcatcaagcgacacaaaacaaaagtcctctacaaaattttg |
459 |
Q |
| |
|
||||||||||||||| | |||| ||| | ||||||||||| |||||||||| || || || |||||| |||| || ||| ||||||||||||||||||| |
|
|
| T |
8740023 |
ctccccttcatcacacaccattgtataattttcctcttcaccttttttctcggcatttttaatcaagtgacataagacatgagtcctctacaaaattttg |
8739924 |
T |
|
| Q |
460 |
gaggataatcaa |
471 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
8739923 |
gagggtaatcaa |
8739912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 874 - 932
Target Start/End: Complemental strand, 8722216 - 8722158
Alignment:
| Q |
874 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgtt |
932 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
8722216 |
ttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgtt |
8722158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 874 - 932
Target Start/End: Complemental strand, 8723561 - 8723503
Alignment:
| Q |
874 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgtt |
932 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
8723561 |
ttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtt |
8723503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 727 - 801
Target Start/End: Complemental strand, 8738824 - 8738750
Alignment:
| Q |
727 |
gttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttat |
801 |
Q |
| |
|
||||||| ||||||| |||||||| |||||||| | |||||| |||||||||||||| || |||| |||||||| |
|
|
| T |
8738824 |
gttaaactttttactctttgcgtacttgtaatcacaaggacacaagaaaaaccattccgggtcatgtgattttat |
8738750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 8706326 - 8706265
Alignment:
| Q |
52 |
gatacttcgttctcattttcagagattgaaggctggtatgttgagaaaggaaagtaattttc |
113 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||| | || ||||||||||||| ||||||| |
|
|
| T |
8706326 |
gatacttcctgctcattttcagagattgaagactgttgtggtgagaaaggaaagaaattttc |
8706265 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 535 - 613
Target Start/End: Complemental strand, 8740563 - 8740485
Alignment:
| Q |
535 |
aacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccaggaaca |
613 |
Q |
| |
|
|||| |||||||||||| ||||| |||| ||||| ||||||||||||||| | ||| || | ||||||||||||||| |
|
|
| T |
8740563 |
aacataacaaacctggtgatcatcaaagatggcatcatgatattcatgaatgatccaattagtcttaacaccaggaaca |
8740485 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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