View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_high_14 (Length: 419)
Name: NF3447_high_14
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_high_14 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 25901317 - 25900981
Alignment:
| Q |
1 |
aattttattgctgatttttaattcatcatatgcctaatgctatatatagtctttcttaattaggtaatcaattgtatttagacaacatatagtcttcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901317 |
aattttattgctgatttttaattcatcatatgcctaatgctatatatagtctttcttagttaggtaatcaattgtatttagacaacatatagtcttcttc |
25901218 |
T |
|
| Q |
101 |
cacttttatttgtttctttctcatctattttgccatagaagaaactagaatagatgggtcttcatgttctcttattcatactttttctcttgagatttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901217 |
cacttttatttgtttctttctcatctattttgccatagaagaaactagaatagatgggtcttcatgttctcttattcatactttttctcttgagatttat |
25901118 |
T |
|
| Q |
201 |
ctacattgaacttgttcacattgacgattgcaacatattcatgaattgctactatgaaaataagtcaattttaatttttaagcattttatttgtgtctgt |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25901117 |
ctacattgaaattgttcacattgacgattgcaacatattcatgaattgctactgtgaaaataagtcaattttaatttttaagcattttatttgtgtctgt |
25901018 |
T |
|
| Q |
301 |
gtatgtgaccaactatagttgtaaaattatctcttgg |
337 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
25901017 |
gtatgtgaccaactatagttgtaaaattatctcttgg |
25900981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 93 - 337
Target Start/End: Original strand, 29199243 - 29199486
Alignment:
| Q |
93 |
tcttcttccacttttatttgtttctttctcatctattttgccatagaagaaactagaatagatgggtcttcatgttctcttattcatactttttctcttg |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| || ||||||||||||||||||| |||||||||| |
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| T |
29199243 |
tcttcttccacttttatttgtttctttctcatctattttgctatagaagaaactagaacagttggatcgtcatgttctcttattcatattttttctcttt |
29199342 |
T |
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| Q |
193 |
agatttatctacattgaacttgttcacattgacgattgcaacatattcatgaattgctactatgaaaataagtcaattttaatttttaagcattttattt |
292 |
Q |
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||||||||||| |||||| ||||||||| ||| | ||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
29199343 |
agatttatctatattgaaattgttcacagcgactgtagcaacatattcttgaattgcta-tgtgaaaataagtcaattttaatttttaagcattttattt |
29199441 |
T |
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| Q |
293 |
gtgtctgtgtatgtgaccaactatagttgtaaaattatctcttgg |
337 |
Q |
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|| ||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
29199442 |
gtttctgtgtgtgtgaccaactatagttgtaaaaccatctcttgg |
29199486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 19768897 - 19768951
Alignment:
| Q |
93 |
tcttcttccacttttatttgtttctttctcatctattttgccatagaagaaacta |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19768897 |
tcttcttccacttttatttgtttctttctcatctattttgctatagaagaaacta |
19768951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 166 - 337
Target Start/End: Original strand, 4351267 - 4351436
Alignment:
| Q |
166 |
gttctcttattcatactttttctcttgagatttatctacattgaacttgttcacattgacgattgcaacatattcatgaattgctactatgaaaataagt |
265 |
Q |
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||||||||||||||| |||||||||| |||||||||| |||||| ||||||||| || || | ||| ||||||||||||||||||||||||||||| |
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| T |
4351267 |
gttctcttattcatattttttctcttcagatttatctttattgaaattgttcacaccaactatagaaacccattcatgaattgctactatgaaaataagt |
4351366 |
T |
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| Q |
266 |
caattttaatttttaagcattttatttgtgtctgtgtatgtgaccaactatagttgtaaaattatctcttgg |
337 |
Q |
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|||||||||||||||||||||||| ||||| | ||||||||||||| ||||||||||||| ||||||||| |
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| T |
4351367 |
caattttaatttttaagcatttta--tgtgtttttgtatgtgaccaaatatagttgtaaaaccatctcttgg |
4351436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 166 - 337
Target Start/End: Complemental strand, 15751 - 15583
Alignment:
| Q |
166 |
gttctcttattcatactttttctcttgagatttatctacattgaacttgttcacattgacgattgcaacatattcatgaattgctactatgaaaataagt |
265 |
Q |
| |
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||||||||||||||| |||||||||| |||||||||| |||||| ||||||||| || || | ||| |||||||||||||||||||||||||||| |
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| T |
15751 |
gttctcttattcata-tttttctcttcagatttatctttattgaaattgttcacaccaactatagaaacccattcatgaattgctactatgaaaataagc |
15653 |
T |
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| Q |
266 |
caattttaatttttaagcattttatttgtgtctgtgtatgtgaccaactatagttgtaaaattatctcttgg |
337 |
Q |
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|||||||||||||||||||||||| ||||| | ||||||||||||| ||||| ||||||| ||||||||| |
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| T |
15652 |
caattttaatttttaagcatttta--tgtgtttttgtatgtgaccaaatatagatgtaaaaccatctcttgg |
15583 |
T |
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