View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_high_17 (Length: 371)
Name: NF3447_high_17
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 44150756 - 44150412
Alignment:
| Q |
20 |
aagggtttatggttagccaaagtttccatagacatggtgtggagagagaacaagatcaatggtaccttgtcttgccaaaaagctataaaagacatcttgc |
119 |
Q |
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| T |
44150756 |
aagggtttatggttagccaaagtttccatagacatggt-tggagagagaacatgatcaatggtaccttgtcttgccaaaaagctataaaagacatcttgc |
44150658 |
T |
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| Q |
120 |
agttacttcctttgttaaaagtctagctagctagctctggccccgtgttgtgaaagaaaaactcttcattaattcttgttgtgaaagggcacaacttgtt |
219 |
Q |
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| T |
44150657 |
agttacttccatcgttaaaagtctagctagctagctatggccccgtgttgtgaaagaaaaactcttcattaattcttgttgttaaagggcacaacttgtt |
44150558 |
T |
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| Q |
220 |
ttccacacacgtttcaaaatttattttgtattcatatatagaataataatagaatatcattaactaaattgttttgtcaatgcatgtgaaaggtcgatct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44150557 |
ttccacacacgtttcaaaatttattttgtattcatatatagaataataatagaatatcattaactaaattgttttgtcaatgcatgtgaaaggtcgatct |
44150458 |
T |
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| Q |
320 |
atattttctcattctccttagtaaaataaaacttcattcatctcac |
365 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44150457 |
atattttctctttctccttagtaaaataaaacttcattcatctcac |
44150412 |
T |
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