View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3447_high_2 (Length: 699)

Name: NF3447_high_2
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3447_high_2
NF3447_high_2
[»] chr3 (5 HSPs)
chr3 (19-312)||(29199918-29200212)
chr3 (368-574)||(19768748-19768954)
chr3 (424-644)||(29199150-29199369)
chr3 (19-177)||(19768404-19768562)
chr3 (220-335)||(19768580-19768696)
[»] chr4 (8 HSPs)
chr4 (19-177)||(37616725-37616883)
chr4 (220-335)||(37616591-37616707)
chr4 (121-234)||(25899364-25899478)
chr4 (204-300)||(1659810-1659906)
chr4 (204-300)||(32226087-32226183)
chr4 (517-644)||(25901099-25901225)
chr4 (400-459)||(5478209-5478268)
chr4 (498-536)||(50227378-50227416)
[»] chr1 (1 HSPs)
chr1 (21-105)||(51389463-51389547)
[»] chr8 (3 HSPs)
chr8 (21-105)||(770508-770592)
chr8 (400-459)||(2685044-2685103)
chr8 (640-688)||(6174364-6174412)
[»] chr2 (1 HSPs)
chr2 (400-459)||(45008469-45008528)
[»] chr7 (3 HSPs)
chr7 (21-62)||(32663146-32663187)
chr7 (125-204)||(32663200-32663279)
chr7 (155-195)||(8028212-8028252)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 29199918 - 29200212
Alignment:
Q  19 gtttatatctttcctttttattactctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggnnnnnn 118  Q
    ||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  29199918 gtttatatctttcctttttattattctct--aacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggttttt 29200015  T
Q  119 nngcatactattttccctagattgcgtgattatggaaggttaaacctgaaatcagaatgacaaggtcctgatacattgatttgcttcaattcttctgtcg 218  Q
      |||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  29200016 ttgcatactaatttccctagattgtgtgattatgaaaggttaaacctgaaatgagaatgacaaggtcctgatacattgattttcttcaatgcttctgtcg 29200115  T
Q  219 ttcttaaggacatga---tatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatatcaattaaatcat 312  Q
     ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  29200116 atcttaaggacatgatgttatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaaataagttatatcaattaactcat 29200212  T

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Target: chr3; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 368 - 574
Target Start/End: Original strand, 19768748 - 19768954
Alignment:
Q  368 agccattatcgttgtgggacctatccgtcaatgaatttgaggcaggggaggggaaccttaaatcatgtgcaaaatgagaaggagaaatttgagaagctga 467  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19768748 agccattatcgttgtggaacctatccgtcaatgaatttgaggcaggg-agaggaaccttaaatcatgtgcaaactgagaaggagaaatttgagaagctga 19768846  T
Q  468 ttttgtttg-agcttgaatctgacagagaaaggttcttatgggtaaattttcttcttccacttttatttgnnnnnnnctcatctattttgctatagaaga 566  Q
    |||| |||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  19768847 ttttttttttagcttgaatctgacggagaaaggttcttatgggtaaattttcttcttccacttttatttgtttctttctcatctattttgctatagaaga 19768946  T
Q  567 aactataa 574  Q
    ||||||||    
T  19768947 aactataa 19768954  T

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Target: chr3; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 424 - 644
Target Start/End: Original strand, 29199150 - 29199369
Alignment:
Q  424 cttaaatcatgtgcaaaatgagaaggagaaatttgagaagctgattttgtttgagcttgaatctgacagagaaaggttcttatgggtaaattttcttctt 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||| |||| |||||||||    
T  29199150 cttaaatcatgtgcaaaatgagaaggagaaatttgagaagctgattttgtttgaatttgaatctgacggagaaaggttcttatggataaagtttcttctt 29199249  T
Q  524 ccacttttatttgnnnnnnnctcatctattttgctatagaagaaactataagagttggatcttcatgttctcttattcatannnnnnnctcttatgattt 623  Q
    |||||||||||||       |||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||       |||||  |||||    
T  29199250 ccacttttatttgtttctttctcatctattttgctatagaagaaactagaacagttggatcgtcatgttctcttattcata-ttttttctctttagattt 29199348  T
Q  624 atctatattgaaattgttcac 644  Q
    |||||||||||||||||||||    
T  29199349 atctatattgaaattgttcac 29199369  T

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Target: chr3; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 19768404 - 19768562
Alignment:
Q  19 gtttatatctttcctttttattactctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggnnnnnn 118  Q
    ||||||||| ||  ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  19768404 gtttatatcatttttttttaacactctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggttttt 19768503  T
Q  119 nngcatactattttccctagattgcgtgattatggaaggttaaacctgaaatcagaatg 177  Q
      ||||||||||||||||||||||  ||||||||||||||||||| |||||| ||||||    
T  19768504 ttgcatactattttccctagattgtttgattatggaaggttaaacttgaaatgagaatg 19768562  T

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Target: chr3; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 19768580 - 19768696
Alignment:
Q  220 tcttaaggac-atgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatatcaattaaatcatgtactc 318  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||     
T  19768580 tcttaaggaccatgatatctattggtatgttcaattatattatgcagattttagtttctaacatgttaaaattaagttatatcaattaactcatgtactg 19768679  T
Q  319 atgcctctaaaactatc 335  Q
    |||||||||||||||||    
T  19768680 atgcctctaaaactatc 19768696  T

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Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 37616883 - 37616725
Alignment:
Q  19 gtttatatctttcctttttattactctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttggnnnnnn 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  37616883 gtttatatcttttctttttattactctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccctcatttgggttttt 37616784  T
Q  119 nngcatactattttccctagattgcgtgattatggaaggttaaacctgaaatcagaatg 177  Q
      |||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||    
T  37616783 ttgcatactattttccctagattgtgtgattatggaaggttaaacttgaaatgagaatg 37616725  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 220 - 335
Target Start/End: Complemental strand, 37616707 - 37616591
Alignment:
Q  220 tcttaaggac-atgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatatcaattaaatcatgtactc 318  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37616707 tcttaaggaccatgatatctattggtatgttcaattatattatgcagatttaagtttctaacatgttaaaattaagttatatcaattaactcatgtactc 37616608  T
Q  319 atgcctctaaaactatc 335  Q
    |||||||||||||||||    
T  37616607 atgcctctaaaactatc 37616591  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 121 - 234
Target Start/End: Complemental strand, 25899478 - 25899364
Alignment:
Q  121 gcatactattttccctagattgcgtgattatggaaggttaaacctgaaatcagaatga-caaggtcctgatacattgatttgcttcaattcttctgtcgt 219  Q
    |||||||| ||||||||||||| ||||||||| |||||||||| |||||| ||||||  |||||||||||||||||||||||||||||| |||||||||     
T  25899478 gcatactaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatgggcaaggtcctgatacattgatttgcttcaatccttctgtcga 25899379  T
Q  220 tcttaaggacatgat 234  Q
    |||||||||||||||    
T  25899378 tcttaaggacatgat 25899364  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 204 - 300
Target Start/End: Complemental strand, 1659906 - 1659810
Alignment:
Q  204 tcaattcttctgtcgttcttaaggacatgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatat 300  Q
    ||||| ||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  1659906 tcaatccttctgtcaatctaaaggacatgatctctattggtatgttcaattatattatgtagatttcagtttctaacatgttaaaatcaagttatat 1659810  T

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Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 204 - 300
Target Start/End: Complemental strand, 32226183 - 32226087
Alignment:
Q  204 tcaattcttctgtcgttcttaaggacatgatatctattggtatgttcaattatattatgcagatttcagtttctaacatgttaaaattaagttatat 300  Q
    ||||| ||||||||  ||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  32226183 tcaatccttctgtcaatctaaaggacatgatctctattggtatgttcaattatattatgtagatttcagtttctaacatgttaaaatcaagttatat 32226087  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 517 - 644
Target Start/End: Complemental strand, 25901225 - 25901099
Alignment:
Q  517 tcttcttccacttttatttgnnnnnnnctcatctattttgctatagaagaaactataagagttggatcttcatgttctcttattcatannnnnnnctctt 616  Q
    ||||||||||||||||||||       |||||||||||||| ||||||||||||| || || ||| ||||||||||||||||||||||       |||||    
T  25901225 tcttcttccacttttatttgtttctttctcatctattttgccatagaagaaactagaatagatgggtcttcatgttctcttattcata-ctttttctctt 25901127  T
Q  617 atgatttatctatattgaaattgttcac 644  Q
      |||||||||| |||||||||||||||    
T  25901126 gagatttatctacattgaaattgttcac 25901099  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 400 - 459
Target Start/End: Original strand, 5478209 - 5478268
Alignment:
Q  400 gaatttgaggcaggggaggggaaccttaaatcatgtgcaaaatgagaaggagaaatttga 459  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  5478209 gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga 5478268  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 536
Target Start/End: Complemental strand, 50227416 - 50227378
Alignment:
Q  498 ggttcttatgggtaaattttcttcttccacttttatttg 536  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  50227416 ggttcttatgggtaaagtttcttctttcacttttatttg 50227378  T

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Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 51389547 - 51389463
Alignment:
Q  21 ttatatctttcctttttattactctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct 105  Q
    |||||||||| |||||||| ||||| ||||| ||||||||||||||  ||||||||||||||||||||| ||||||||| |||||    
T  51389547 ttatatcttttctttttatcactctttctaaaacttctttgtttgatctttttatggatttgcatttgcgagaatttaagcccct 51389463  T

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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 770508 - 770592
Alignment:
Q  21 ttatatctttcctttttattactctctctaacacttctttgtttgacatttttatggatttgcatttgcaagaatttaaacccct 105  Q
    |||||||||| |||||||| || || ||||| ||||||||||||| | ||||||||||||||||||||| ||||||||| |||||    
T  770508 ttatatcttttctttttatcaccctgtctaaaacttctttgtttggcctttttatggatttgcatttgcgagaatttaagcccct 770592  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 400 - 459
Target Start/End: Complemental strand, 2685103 - 2685044
Alignment:
Q  400 gaatttgaggcaggggaggggaaccttaaatcatgtgcaaaatgagaaggagaaatttga 459  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  2685103 gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga 2685044  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 640 - 688
Target Start/End: Complemental strand, 6174412 - 6174364
Alignment:
Q  640 ttcacttttctcacctttcaacagagacaaaagtttttcggtgatgatg 688  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  6174412 ttcacttttctcacctttcaacagagacaaaagttttccagtgatgatg 6174364  T

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Target: chr2 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 400 - 459
Target Start/End: Complemental strand, 45008528 - 45008469
Alignment:
Q  400 gaatttgaggcaggggaggggaaccttaaatcatgtgcaaaatgagaaggagaaatttga 459  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  45008528 gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga 45008469  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 32663146 - 32663187
Alignment:
Q  21 ttatatctttcctttttattactctctctaacacttctttgt 62  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  32663146 ttatatctttcctttttattactctctctaacacttatttgt 32663187  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 32663200 - 32663279
Alignment:
Q  125 actattttccctagattgcgtgattatggaaggttaaacctgaaatcagaatgacaaggtcctgatacattgatttgctt 204  Q
    |||||||||||| ||||| ||||| | |||||||||| |||||| | |||||| || | ||||||||||||  |||||||    
T  32663200 actattttccctggattgtgtgataaaggaaggttaagcctgaattgagaatggcaggttcctgatacattagtttgctt 32663279  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 8028252 - 8028212
Alignment:
Q  155 aggttaaacctgaaatcagaatgacaaggtcctgatacatt 195  Q
    |||||||||||||||  |||||| |||||||||||||||||    
T  8028252 aggttaaacctgaaaggagaatggcaaggtcctgatacatt 8028212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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