View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3447_high_25 (Length: 284)
Name: NF3447_high_25
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 24 - 276
Target Start/End: Original strand, 49125902 - 49126154
Alignment:
| Q |
24 |
taaatataatttacatggatgttatttattatgactgatttaatcatgaaagactccagctaataaattaaccaactaacaagtgtctttgtcggaaaac |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49125902 |
taaatataatttacatggatgttatttattatgactgatttaatcatgaaagactccagctaataaattaaccaactaacaagtgtctttgtcggaaaac |
49126001 |
T |
|
| Q |
124 |
ttggagggtatagtgaataatatagttacatgtttccttgaatgccttcatggccgagttgtgaaacaattttcgtgacatccaacattattccatgatt |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49126002 |
ttggagggtatagtgaataatatagttacatgtttccttgaatgccttcatggccgagttgtgaaacaattttcgtgacatccaacattattccatgatt |
49126101 |
T |
|
| Q |
224 |
taagtccctcgcaatatcataaattttgttattgctgctcagtttttcatctc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49126102 |
taagtccctcgcaatatcataaattttgttattgctgctcagtttttcatctc |
49126154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 37664387 - 37664463
Alignment:
| Q |
84 |
taataaattaaccaactaacaagtgtctttgtcggaaaacttggagggtatagtgaataatatagttacatgtttcc |
160 |
Q |
| |
|
|||| |||||||||| |||||| | |||||||| |||| | ||| || ||||||||||||| ||||||||||||| |
|
|
| T |
37664387 |
taatgaattaaccaattaacaaatatctttgtcagaaatcacagagcgtgtagtgaataatatggttacatgtttcc |
37664463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University