View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_high_28 (Length: 250)
Name: NF3447_high_28
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 4 - 238
Target Start/End: Complemental strand, 38090110 - 38089877
Alignment:
| Q |
4 |
atagacttatcaatttaaccacgacaattccattgttgctcttttccaatcctcactcaaacatagggttgattctgcaccctatgaatcaatttttcct |
103 |
Q |
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| T |
38090110 |
atagacttatcaatttaagcacgagaattccattgttgctcttttccaatcctcactcaaacatagggttgattctgcaccg-atgaatcaattttgcct |
38090012 |
T |
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| Q |
104 |
cgttgtcaccaatagtttccaacaagcaggaccaacacttctaatcaaagctatcagtgtctaggtattattctttagccttgaccccaacaattcatgt |
203 |
Q |
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| T |
38090011 |
cgttgtcaccaatagtttccaacaagcaggaccaacacttctaatcaaagctatcagtgtctaggtattattctttagccttgaccccaacaattcatgt |
38089912 |
T |
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| Q |
204 |
acataactttctggagagaatcatcggtttgtctc |
238 |
Q |
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| T |
38089911 |
acataactttctggagagaatcatcggtttgtctc |
38089877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 38092923 - 38092863
Alignment:
| Q |
178 |
ttagccttgaccccaacaattcatgtacataactttctggagagaatcatcggtttgtctc |
238 |
Q |
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|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38092923 |
ttagccctgaccccaacagttcatgtacataactttctgaagagaatcatcggtttgtctc |
38092863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 38096196 - 38096137
Alignment:
| Q |
173 |
attctttagccttgaccccaacaattcatgtacataactttctggagagaatcatcggtt |
232 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |
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| T |
38096196 |
attctttagccttgaccccagcaattcatgtacataactttccgaagagaatcatcggtt |
38096137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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