View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_high_36 (Length: 236)
Name: NF3447_high_36
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 7114665 - 7114885
Alignment:
| Q |
2 |
caactaaacacgggaaatttttagggttgtttatttaatgaagatgtttggattt--aaaaagaaaaacacggtaaatttttatcgaaaacaacaatatt |
99 |
Q |
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| T |
7114665 |
caactaaacacggtaaatttttagggttgtttatataatgaagatgtttgaatttcaaaaaaaaaaaacacggtaaatttttatcgaaaacaacaatatt |
7114764 |
T |
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| Q |
100 |
tgtaataaaattatgtttttaagataaggtgtataagttttaagataaatttaccactttagcctgtacaagtttg-ccatgatnnnnnnntctattaat |
198 |
Q |
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| T |
7114765 |
tgtagtaaaattatgtttttaagataaggtatataagtttcaaaataaatttactactttagcctatacaagtttgcccgtgataaaaaaatctattaat |
7114864 |
T |
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| Q |
199 |
ttattattaatcagggacata |
219 |
Q |
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| T |
7114865 |
ttattattaatcagggacata |
7114885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 18247817 - 18247751
Alignment:
| Q |
87 |
aaacaacaat-atttgtaataaaattatgtttttaagataaggtgtataagttttaagataaattta |
152 |
Q |
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|||||||||| |||| | |||||||||||| ||||| |||| ||||||| |||||||||||||||| |
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| T |
18247817 |
aaacaacaattatttattataaaattatgtatttaatataaaatgtataaattttaagataaattta |
18247751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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