View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_high_6 (Length: 536)
Name: NF3447_high_6
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Complemental strand, 37220812 - 37220300
Alignment:
| Q |
1 |
caaattgaactttatcttttaaatctttgatatattcagctggttgcaactttatcttttagatctttgatattcagctagtagtatattgtaacaacaa |
100 |
Q |
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| T |
37220812 |
caaattgaactttatcttttaaatctttgatatattcagctggtttcaactttatcttttagatctttgatattcagctagtagtatattgtaacaacaa |
37220713 |
T |
|
| Q |
101 |
tannnnnnnnnaagtgaagtaacaaaaactctccgtatttacctctaactactttataaatcctattataaatagaacaatttccatcctctcatccttc |
200 |
Q |
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| T |
37220712 |
tatatttttttaagtgaagttacaaaaactctccgtatttacctctaactactttataaatcctattataaatacaacaatttccatcctctcatccttc |
37220613 |
T |
|
| Q |
201 |
cgtaagtaatcatgtcaaattctaatggcagtgatactataaagttgaagaaaggagcatggtcattgcaagaggatgcaatattaaaagaatacgtgag |
300 |
Q |
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| T |
37220612 |
cgtaagtaatcatgtcaaattctaatggcagtgatactataaagttgaagaaaggagcatggtcattgcacgaggatgcaatattaaaagaatacgtgag |
37220513 |
T |
|
| Q |
301 |
aaaatatggagagggcaattgggatgatgtaaaaaagaaaaccgaactttttcgatgtggtaaaagttgtcgtttaagatggcttaatcatctacatcct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37220512 |
aaaatatggagagggcaattgggatgatgtaaaaaagaaaaccgaactttttcgatgtggtaaaagttgtcgtttaagatggcttaatcatctacatcct |
37220413 |
T |
|
| Q |
401 |
gatttaaaaaagggttcaattactagagaagaagaacagaaaatcgttgaacttcatgccaagatcggacccaaatggtctctaatggttcaagaggttt |
500 |
Q |
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| T |
37220412 |
gatttaaaaaagggttcaattactagagaagaagaacagaaaatcgttgaacttcatgccaagatcggacccaaatggtctctaatggttcaagaggttt |
37220313 |
T |
|
| Q |
501 |
gtatattcttcta |
513 |
Q |
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||||||||||||| |
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| T |
37220312 |
gtatattcttcta |
37220300 |
T |
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