View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_low_11 (Length: 486)
Name: NF3447_low_11
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_low_11 |
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| [»] scaffold0903 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 12 - 474
Target Start/End: Original strand, 21716913 - 21717375
Alignment:
| Q |
12 |
agagagtattcgaatagcagaggatctcactcattttcaatttctggaaacggtggatcgcgcaatattggtggtggattccgcagcattggccgtaacc |
111 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||||||||||| |
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| T |
21716913 |
agagggtattcgaatagcagaggatctcactcattttcaatttccagaaacggtggatcgtgcaatattggtggtggatcccgcagcagtggccgtaacc |
21717012 |
T |
|
| Q |
112 |
caaacagcggtggtcgtaaccccaagcagatgatgtctatgttacctgtttgtggctgtaacctccctatgaggatgtatatagcaaacacatttgagaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21717013 |
caaacagcggtggtcgtaaccccaagcagatgatgtctatgttacctgtttgtggttgtaacctccctatgaggatgtatatagcaaacacatttgagaa |
21717112 |
T |
|
| Q |
212 |
tcaaggacgcaggttctggcgctgtacaaggtggaatgatgaggttagtttaatcctttattgatattagctttattgtttgctggtttttggatattaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21717113 |
tcaaggacgcaggttctggcgctgtacaaggtggaatgatgaggttagtttaatcctttattgatattagctttattgtttgctggtttttggatattaa |
21717212 |
T |
|
| Q |
312 |
gtgtaatcctatattctgggtaatttatacaggatcaacatacatgtgctttgttcatttgggacgatgaatttgtcccagggatgacacacatgatgga |
411 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21717213 |
gtgtaatcctttattctgggtaatttatacaggatcaacatacatgtgctttgttcatttgggacgatgaacttgtcccagggatgacacacatgatgga |
21717312 |
T |
|
| Q |
412 |
tgataatgctgccatggaggcgtctagggtggaaggaagaaatgatgaaggatgtagaaaatg |
474 |
Q |
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| T |
21717313 |
tgataatgctgccatggaggcgtctagggtggaaggaagaaatgatgaaggatgtaggaaatg |
21717375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 120 - 429
Target Start/End: Complemental strand, 20656640 - 20656334
Alignment:
| Q |
120 |
ggtggtcgtaaccccaagcagatgatgtctatgttacctgtttgtggctgtaacctccctatgaggatgtatatagcaaacacatttgagaatcaaggac |
219 |
Q |
| |
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|||||||||||||| || |||||||||| || | ||||| ||||||| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
20656640 |
ggtggtcgtaacccgaaccagatgatgtgtacgctacctatttgtggttgtaaactccctatgaggatgtacatagcaaccacatttgagaatcaaggac |
20656541 |
T |
|
| Q |
220 |
gcaggttctggcgctgtacaaggtggaatgatgaggttagtttaatcctttattgatattagctttattgtttgctggtttttggatat-taagtgtaat |
318 |
Q |
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||||||| ||| |||| | ||||||||| | |||||||||||||||||| | ||| | || ||||||| || || || || ||| ||| ||||| |
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| T |
20656540 |
gcaggttttggtgctgcagaaggtggaacg--gaggttagtttaatccttga-tgaaacacgc-ttattgtatggtgtttgttttttatataatggtaat |
20656445 |
T |
|
| Q |
319 |
cctatattctgggtaatttatacaggatcaacatacatgtgctttgttcatttgggacgatgaatttgtcccagggatgacacacatgatggatgataat |
418 |
Q |
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| | || | |||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||| ||||||||||||| || ||||||||||||| |
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| T |
20656444 |
cttctaatttgggtaatttatacaggaccaatatacatgtgggttgttcatttgggacgatgaacttgttccagggatgacacccacgatggatgataat |
20656345 |
T |
|
| Q |
419 |
gctgccatgga |
429 |
Q |
| |
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||||||||||| |
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| T |
20656344 |
gctgccatgga |
20656334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 20656754 - 20656691
Alignment:
| Q |
27 |
agcagaggatctcactcattttcaatttctggaaacggtggatcgcgcaatattggtggtggat |
90 |
Q |
| |
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|||||||| ||||||||||||||||| ||| ||||||||||||| ||||| | ||||||| ||| |
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| T |
20656754 |
agcagaggttctcactcattttcaatctctagaaacggtggatcccgcaagagtggtggtagat |
20656691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0903 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: scaffold0903
Description:
Target: scaffold0903; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 474
Target Start/End: Original strand, 496 - 958
Alignment:
| Q |
12 |
agagagtattcgaatagcagaggatctcactcattttcaatttctggaaacggtggatcgcgcaatattggtggtggattccgcagcattggccgtaacc |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| ||| ||||||| |
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| T |
496 |
agagggtattcgaatagcagaggatctcactcattttcaatttccagaaacggtggatcgcgcaatattggtcgtaacccaaatagcggtggtcgtaacc |
595 |
T |
|
| Q |
112 |
caaacagcggtggtcgtaaccccaagcagatgatgtctatgttacctgtttgtggctgtaacctccctatgaggatgtatatagcaaacacatttgagaa |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
596 |
caaacagcggtggtcgtaaccccaagcagatgatatctatgttacttgtttgtggatgtaacctccctatgaggatgtatatagcaaacacatttgagaa |
695 |
T |
|
| Q |
212 |
tcaaggacgcaggttctggcgctgtacaaggtggaatgatgaggttagtttaatcctttattgatattagctttattgtttgctggtttttggatattaa |
311 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
696 |
tcaaggacgcaggttctggcgctatacaaggtggaatgatgaggttagtttaatcctttattgatattagctttaatgtttgctggtttttggatattaa |
795 |
T |
|
| Q |
312 |
gtgtaatcctatattctgggtaatttatacaggatcaacatacatgtgctttgttcatttgggacgatgaatttgtcccagggatgacacacatgatgga |
411 |
Q |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
796 |
gtgtaatcctttattctgggtaatatatacaggatcaacatacatgtgctttgttcatttgggacgatgaacttgtcccagggatgacacacatgatgga |
895 |
T |
|
| Q |
412 |
tgataatgctgccatggaggcgtctagggtggaaggaagaaatgatgaaggatgtagaaaatg |
474 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
896 |
tgataatgctgccatggaggcgtctagggtggaaggaagaaatgatgaaggatgtaggaaatg |
958 |
T |
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