View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_low_14 (Length: 422)
Name: NF3447_low_14
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 36362567 - 36362984
Alignment:
| Q |
1 |
tcatcactagcagatgcatagggtggaatataatcatcgaatcccaatagctcagctgttaaatttccacagttagttagacagcagtnnnnnnngt--t |
98 |
Q |
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| T |
36362567 |
tcatcactagcagatgcatagggtggaatataatcatcgaatcccaatagctcagctgttaaatttccacagttagttagacaacagtaaaaaaaaaaat |
36362666 |
T |
|
| Q |
99 |
tactgtgcatttacaaaatgtgaaagaatcaatattatatgcaagaatatgtcctactttaatcttgtgtttgttannnnnnnnaccaaatcggtaattc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36362667 |
tactgtgcatttacaaaatgtgaaagaatcaatattatatgcaagaatatgtcctactttaatcttgtgtttgttattttttttaccaaatcggtaattc |
36362766 |
T |
|
| Q |
199 |
tggtaattttttatctctttggcagtaaatttatgtctcatgatgcactttacctttgtcaaaaatataaagcatactgtcttaaattgcatatttaatg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36362767 |
tggtaattttttatctctttggcagtaaatttatgtctcatgatgcactttacctttgtcaaaaatataaagcatactgtcttaaattgcatatttaatg |
36362866 |
T |
|
| Q |
299 |
ctaccaaacagaaccatgtgaatggaatggaatggaatttaaagcccggtcacaagattcacactcatcaagaggtgtagtagagtactagcatcatggt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36362867 |
ctaccaaacagaaccatgtgaatggaatggaatggaatttaaagcccggtcacaagattcacactcatcaagaggtgtagtagagtactagcatcatggt |
36362966 |
T |
|
| Q |
399 |
tctgttttagttctgtgc |
416 |
Q |
| |
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|||||||||||||||||| |
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| T |
36362967 |
tctgttttagttctgtgc |
36362984 |
T |
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