View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3447_low_21 (Length: 321)

Name: NF3447_low_21
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3447_low_21
NF3447_low_21
[»] chr7 (1 HSPs)
chr7 (33-321)||(49126135-49126426)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 33 - 321
Target Start/End: Complemental strand, 49126426 - 49126135
Alignment:
Q  33 tatgtctgttgtccctcaaaatatgataattttcannnnnnnnc---tcacatttgggtttctcatttatgaaaatgtttcagttttggaccttatcgct 129  Q
    |||||| ||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  49126426 tatgtccgttgtccctcaaaatatgataattttcatttttttttctttcacatttgggtttctcatttatgaaaatgtttcagttttggaccttatagct 49126327  T
Q  130 aactccgtctgtcaaaaagcctatgtaacagctactgaattttgatataagaaatccttgcttggaacatctaaacgcatgtaacagacaactaagattt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49126326 aactccgtctgtcaaaaagcctatgtaacagctactgaattttgatataagaaatccttgcttggaacatctaaacgcatgtaacagacaactaagattt 49126227  T
Q  230 tgtagcttttacacagactctctggctgatggagttggctacatggatcggagttgacaccttttcaaaagtgagatgaaaaactgagcagc 321  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49126226 tgtagcttttacacagactctctgactgacgaagttggctacatggatcggagttgacaccttttcaaaagcgagatgaaaaactgagcagc 49126135  T

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