View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_low_23 (Length: 307)
Name: NF3447_low_23
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_low_23 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 16749064 - 16748763
Alignment:
| Q |
1 |
tacagagtatgtgaatgaaggaatgaaataagaaacaagagaatataatggaattattcagaatagtgatgataagctccaatagtacaggaattatgaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
16749064 |
tacaaagtatgtgaatgaaggaatgaaataagaaacaagagaatataatggaattattcagaatagtgataataagatccaatagtacaggaattatgaa |
16748965 |
T |
|
| Q |
101 |
agtttgtaaaagaagataacaattgatagtgactactaccaatccccaaaagcacgcaggctttcccgtatcaccacaggtgaccccactaaatcataac |
200 |
Q |
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| T |
16748964 |
agtttgtaaaagaagataacaattgatagtgactactaacaatccccaaaagcacgcaggcttccccgtatcaccacaggtgaccccactaaatcataac |
16748865 |
T |
|
| Q |
201 |
agaaagatagatgccatattccttctcattccttgtacttatataatcagctttctttttactcacgcatactccattgccacgttaccattctctgctc |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||| |
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| T |
16748864 |
agaaagataaatgccatattccttctcattccttgtacttatataatcagctttctttctactcacgcatacttcattgccacgttacccttctttgctc |
16748765 |
T |
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| Q |
301 |
ct |
302 |
Q |
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|| |
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| T |
16748764 |
ct |
16748763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 14919700 - 14919411
Alignment:
| Q |
13 |
gaatgaaggaatgaaataagaaacaagagaatataatggaattattcagaatagtgatgataagctccaatagtacaggaattatgaaagtttgtaaaag |
112 |
Q |
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| T |
14919700 |
gaatgaaggaatgaaataagaaacaagagaatataatggaattattcagaatagtgataataagatccaatagtacaggaattatgaaagtttgtaaaag |
14919601 |
T |
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| Q |
113 |
aagataacaattgatagtgactactaccaatccccaaaagcacgcaggctttcccgtatcaccacaggtgaccccactaaatcataacagaaagatagat |
212 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14919600 |
aagataacaattgatagtgactactaacaatccccaaaagcacgcaggcttccccgtatcaccacaggtgaccccactaaatcataacagaaagataaat |
14919501 |
T |
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| Q |
213 |
gccatattccttctcattccttgtacttatataatcagctttctttttactcacgcatactccattgccacgttaccattctctgctcct |
302 |
Q |
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| T |
14919500 |
gccatattccttctcattccttgtacttatataatcagctttctttctactcacgcatacttcattgccacgttacccttctttgctcct |
14919411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 14862 - 14951
Alignment:
| Q |
1 |
tacagagtatgtgaatgaaggaatgaaataagaaac-aagagaatataatggaatt-attcagaatagtgatgataagctccaatagtac |
88 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |
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| T |
14862 |
tacagagtatgcgaatgaaggaatgaaataagaaacaaagagaatataatggaattaattcagaatagtgataataagatccaatagtac |
14951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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