View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3447_low_27 (Length: 282)
Name: NF3447_low_27
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 25901584 - 25901333
Alignment:
| Q |
19 |
gatatccacagtaaacacattggaagcat---taggccttgagattcaacaatgtgttattagctgtttcaatgatttcacaatgcaggcttcttgctca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25901584 |
gatatccacagtaaacacattggaagcatcattaggccttgagattcaacaatatgttattagctgtttcaatgatttcacaatgcaggcttcttgctca |
25901485 |
T |
|
| Q |
116 |
gaggtacattagttactactcccttggttacattttaattgtcgcatttgtagtaaaaatgtgttttcatttctctgccatttttaaagttcaatgtgta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25901484 |
gaggtacattagttactactcccttggttacattttaattgtcgcatttgtagtaaaaatgtgttttcatttctttgccatttttaaagttcaatgtgta |
25901385 |
T |
|
| Q |
216 |
tgtaaataacttttatttgacggttaaaaaggagccgagagagtaatattaa |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25901384 |
tgtaaataacttttatttgacggttaaaaaggagccgagagagtaatattaa |
25901333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 212
Target Start/End: Complemental strand, 52002601 - 52002406
Alignment:
| Q |
21 |
tatccacagtaaacacattggaagcattaggccttgagattcaacaatgtgttattagctgtttcaatgatttcacaatgcaggcttcttgctcagaggt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52002601 |
tatccacagtaaacacattggaagcattaggccttgagattcaacaatgtgttattagctgtttcaatgatttcacaatgcaggcttcttgctcagaggt |
52002502 |
T |
|
| Q |
121 |
acattagttact----actcccttggttacattttaattgtcgcatttgtagtaaaaatgtgttttcatttctctgccatttttaaagttcaatgt |
212 |
Q |
| |
|
|||||||||||| | | |||| ||||| |||||| |||||| ||||||||||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
52002501 |
acattagttacttactaattccttagttactttttaaacgtcgcagttgtagtaaaaatgtgttttcatttcttcgtcgtttttaaagttcaatgt |
52002406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 52002311 - 52002258
Alignment:
| Q |
214 |
tatgtaaataacttttatttgacggttaaaaaggagccgagagagtaatattaa |
267 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
52002311 |
tatgtaaacaactttaatttgactgttaaaaaggagccgaggaagtaatattaa |
52002258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 29010086 - 29010180
Alignment:
| Q |
26 |
acagtaaacacattggaagcattaggccttgagattcaacaatgtgttattagctgtttcaatgatttcacaatgcaggcttcttgctcagaggt |
120 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| || |||||||| ||| ||||||||||||| || |||| || |||||||||||||| |
|
|
| T |
29010086 |
acagtgaacacattagaagcattaggccttgagattcaccagtgtgttataagcagtttcaatgatttttcattgcaagcatcttgctcagaggt |
29010180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 13148831 - 13148737
Alignment:
| Q |
26 |
acagtaaacacattggaagcattaggccttgagattcaacaatgtgttattagctgtttcaatgatttcacaatgcaggcttcttgctcagaggt |
120 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| || |||||||| ||| ||||||||||||| || |||| || |||||||||||||| |
|
|
| T |
13148831 |
acagtgaacacattagaagcattaggccttgagattcatcagtgtgttataagcagtttcaatgatttttcattgcaagcatcttgctcagaggt |
13148737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University