View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_low_34 (Length: 238)
Name: NF3447_low_34
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_low_34 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 28769414 - 28769194
Alignment:
| Q |
18 |
gtttcaagtaattatgacaatagcaaataccagcatcccatgattttcaataaaaacaagtaggaataatataaatttattaaaatattagtcgtcaatt |
117 |
Q |
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| T |
28769414 |
gtttcaagtaattatgacaatagcaaataccatcatcccatgattttcaataaaaaccagtaggaataatataaatttattaaaatattagcagtcaatt |
28769315 |
T |
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| Q |
118 |
gctacttaatttgagataagtgatggaataaatggatgcatgtacttactatgttcctaannnnnnncatggtttagatcatttggtatgaagaataata |
217 |
Q |
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| T |
28769314 |
gctacttaatttgagataagtgatggaataaatggatgcatgtacttattatgttcctaatttttttcatggtttagatcgtttggtatgaagaataata |
28769215 |
T |
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| Q |
218 |
cactctttctttatgattact |
238 |
Q |
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| T |
28769214 |
cgctctttctttatgattact |
28769194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 28763481 - 28763393
Alignment:
| Q |
77 |
gtaggaataatataaatttattaaaatattagtcgtcaattgctacttaatttgagataagtgatggaataaatggatgcatgtactta |
165 |
Q |
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| T |
28763481 |
gtaggaatgatataaatttattaacatattagaagtcaattcctatttcattaaaaataagtgattgaataaatggatacatttactta |
28763393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 28764519 - 28764430
Alignment:
| Q |
76 |
agtaggaataatataaatttattaaaatattagtcgtcaattgctacttaatttgagataagtgatggaataaatggatgcatgtactta |
165 |
Q |
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| T |
28764519 |
agtaggaatgttgtaaatttattaaaatattagaagtcaattactatttcgatttagataagtgatggaataaatagatacttgtactta |
28764430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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