View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_low_36 (Length: 236)
Name: NF3447_low_36
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 55208991 - 55208771
Alignment:
| Q |
1 |
atcacaacatgactctacatcttctactaccaatgctctaatttctttgatagattctaaggcgttattgagcgataacaccatagcttcattttcatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55208991 |
atcacaacatgactctacatcttctactaccaatgctctaatttctttgatagattctaaggcgttattgagcgataacaccatagcttcattttcatgt |
55208892 |
T |
|
| Q |
101 |
gcagctctccgccatgattgattctctgtctctagtctcgtcaaaaattgttccaactccatccttttcttcgtcgcttgtgcaatttgttcatcctttt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55208891 |
gcagctctccgccatgattgattctctgtctctagtcttgtcaaaaattgttccaactccatccttttcttcgtcgcttgtgcaatttgttcatcctttt |
55208792 |
T |
|
| Q |
201 |
gtcttagtatatgaaacacat |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
55208791 |
gtcttagtatatgaaacacat |
55208771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 2 - 214
Target Start/End: Complemental strand, 13135455 - 13135246
Alignment:
| Q |
2 |
tcacaacatgactctacatcttctactaccaatgctctaatttctttgatagattctaaggcgttattgagcgataacaccatagcttcattttcatgtg |
101 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| ||| ||||||||| |||||||||||||||||| || |||||||||||||||||||| | | |
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| T |
13135455 |
tcacaacatgactctacttcttctatagccaatgttct---ttctttgatttgttctaaggcgttattgagggacaacaccatagcttcattttcccgag |
13135359 |
T |
|
| Q |
102 |
cagctctccgccatgattgattctctgtctctagtctcgtcaaaaattgttccaactccatccttttcttcgtcgcttgtgcaatttgttcatccttttg |
201 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||| |||| |||||||||| ||||| ||||||||| ||||||||||| ||||||||||||||||| |
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| T |
13135358 |
aagctctccgccacatttgattatctgtttctagtctgatcaagaattgttccagctccaaccttttctttgtcgcttgtgctatttgttcatccttttg |
13135259 |
T |
|
| Q |
202 |
tcttagtatatga |
214 |
Q |
| |
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||||||||||||| |
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|
| T |
13135258 |
tcttagtatatga |
13135246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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