View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_low_39 (Length: 234)
Name: NF3447_low_39
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3036714 - 3036497
Alignment:
| Q |
1 |
tcccagctcgtgacacttataacactcaatagaatctgtgttgattcttcccctaccctttcctctagcacctgaacgccctcttcctctaccaaatccc |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
3036714 |
tcccagcttgtgacacttataacactcaatagaatctttgttgattcttcccctaccctttcctctagcacctgaatgccctcttcctctaccatatccc |
3036615 |
T |
|
| Q |
101 |
atagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcgttcttgaacaagtaagctactct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3036614 |
atagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcgttcttgaacaagtaagctactct |
3036515 |
T |
|
| Q |
201 |
gaagttcatcgatgaaga |
218 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
3036514 |
gaagttcatcgatgaaga |
3036497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 39 - 209
Target Start/End: Complemental strand, 16863423 - 16863253
Alignment:
| Q |
39 |
tgttgattcttcccctaccctttcctctagcacctgaacgccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttg |
138 |
Q |
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|||| |||||||| |||||| |||||||| |||||||||||||||||||||||||| |||| | |||||||||||| ||||| || ||||||||||||| |
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| T |
16863423 |
tgttaattcttcctctaccccttcctctaacacctgaacgccctcttcctctaccatatcctacagatcctcttccaccattagatgccttcaaagcttg |
16863324 |
T |
|
| Q |
139 |
ctcaatatcaatttcttgattctgagattttatgcgtcgttcttgaacaagtaagctactctgaagttcat |
209 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||||| |||||||||||||||| || || |||||||||| |
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|
| T |
16863323 |
ttcaatatcaatttcttgattttgagttttcatgcgttgttcttgaacaagtaaactgctatgaagttcat |
16863253 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 20529013 - 20528888
Alignment:
| Q |
73 |
tgaacgccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgattctgagattttatg |
172 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||||||| ||||| ||||||||||||||||||||| ||||| ||||||| || |||||||| ||| |
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| T |
20529013 |
tgaacgccctcttcctctcccatatcccacagatcctcttccaccattagaaaccttcaaagcttgctcagtatcagtttcttggttttgagatttcatg |
20528914 |
T |
|
| Q |
173 |
cgtcgttcttgaacaagtaagctact |
198 |
Q |
| |
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||| |||||||||||||||| ||||| |
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|
| T |
20528913 |
cgttgttcttgaacaagtaaactact |
20528888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 40612968 - 40613109
Alignment:
| Q |
60 |
ttcctctagcacctgaacgccctcttcctctaccaaatcccatagatcctcttcctccattcgaaaccttcaaagcttgctcaatatcaatttcttgatt |
159 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| | |||| | |||||| | ||||| ||||||||||||||||| |||| |||||| |||||||| |
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| T |
40612968 |
ttcctctagcacctgaacgtcctcttcctctaccataccccacgaaacctctttcaccattggaaaccttcaaagcttgttcaacatcaatgtcttgatt |
40613067 |
T |
|
| Q |
160 |
ctgagattttatgcgtcgttcttgaacaagtaagctactctg |
201 |
Q |
| |
|
|||||||| ||| || |||||||||||||||| |||||||| |
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| T |
40613068 |
ttgagatttcatgtgttgttcttgaacaagtaaactactctg |
40613109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 20542289 - 20542213
Alignment:
| Q |
125 |
accttcaaagcttgctcaatatcaatttcttgattctgagattttatgcgtcgttcttgaacaagtaagctactctg |
201 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||||||||| |||||| |||||||||||||||| |||||||| |
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| T |
20542289 |
accttcaaagcttgttcaacatcaaagtcttgattctgagatttcatgcgttgttcttgaacaagtaaactactctg |
20542213 |
T |
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