View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_low_4 (Length: 575)
Name: NF3447_low_4
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_low_4 |
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| [»] scaffold0760 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 296 - 568
Target Start/End: Complemental strand, 14195254 - 14194978
Alignment:
| Q |
296 |
tcatacttcaacatatcaaatgtgtctacggccttttattatttgcactt---taatattttaattgtatataataatggaacaaatgaaatgaataaca |
392 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14195254 |
tcatactttaacatatcaaatgtgtctacggccttttattatttgcacttctttagtattttaattgtatataataatggaacaaatgaaatgaataaca |
14195155 |
T |
|
| Q |
393 |
aagttataattaatccttttt-cattcactttccaagaattaaaatgagaattttgttctatcccgtcataaaatactaaaataatgaatgaaagttcta |
491 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14195154 |
aagttataattaatcattttttcattcactttccaagaattaaaatgaaaattttgttctatcccgtcataaaatactaaaataatgaatgaaaattcta |
14195055 |
T |
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| Q |
492 |
ttccattcactacaagaaaatgaggtaatacatacacacggaatccagtgaggattcatagatatggtttcttctca |
568 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14195054 |
ttccattcactacaagaaaataaggtaatacatacacacggaatatagtgaggattcatagatatggtttcttctca |
14194978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 2e-94; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 42941289 - 42941568
Alignment:
| Q |
20 |
acttggaatcctagagaatgtcttaatagaagatgaagccggctgtcttttttgggatctgctata------tgtcatgtctgtt----------acgga |
103 |
Q |
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| T |
42941289 |
acttggaatcctagagaatgtcgtaatagaagatgaagccggctgtcttttttgg-atctgctataggcatctgtcatgtctgttttcagctgttacgta |
42941387 |
T |
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| Q |
104 |
tggggtttttagcgcagcagttctgtttatagggaggggtttctgtgcttaggtgttttattggttttgcat--gtttcatgccattgtacaactgctgt |
201 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||| ||||||| |
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| T |
42941388 |
tggggtttttagcgcagcagttctgtttttagggaggggtttctgtgcttagttgtttttttggttttgcatatgtttcatgccattgtacagctgctgt |
42941487 |
T |
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| Q |
202 |
gctgattgttttgtccattgtaacaatctgccttttgcacatcttgtgctaggctcttttctatatttaatatgctgattc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42941488 |
gctgattgttttgtccattgtaacaatctgccttttgcacatcttgtgctaggctcttttctatatataatatgctgattc |
42941568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 37269879 - 37269599
Alignment:
| Q |
20 |
acttggaatcctagagaatgtcttaatagaagatgaagccggctgtcttttttgggatctgctata------tgtcatgtctgtt----------acgga |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| | ||| |
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| T |
37269879 |
acttggaatcctagagaatgtcttaatagaagatgaagccggctgtcttttttgg-atctgctataggcatctgccatgtctgttttcagctgttatgga |
37269781 |
T |
|
| Q |
104 |
tggggtttttagcgcagcagttctgtttatagggaggggtttctgtgcttaggtgttttatt-ggttttgcat--gtttcatgccattgtacaactgctg |
200 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||| |||||| |
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| T |
37269780 |
tggggttttttgcgcagcagttctgtttatcgggaggggtttctgtgcttaggtgttttctttggttttgcatatgtttcatgccaatgtacagctgctg |
37269681 |
T |
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| Q |
201 |
tgctgattgttttgtccattgtaacaatctgccttttgcacatcttgtgctaggctcttttctatatttaatatgctgattc |
282 |
Q |
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| T |
37269680 |
tgctgattgttttgtccattttaacaatctgccttttgcacatcttgtgctaggctcttttctatatataatatgctgattc |
37269599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 36404100 - 36404063
Alignment:
| Q |
20 |
acttggaatcctagagaatgtcttaatagaagatgaag |
57 |
Q |
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||||||||||||||||||||| | |||||||||||||| |
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| T |
36404100 |
acttggaatcctagagaatgtttaaatagaagatgaag |
36404063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 160; Significance: 5e-85; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 1758 - 1479
Alignment:
| Q |
20 |
acttggaatcctagagaatgtcttaatagaagatgaagccggctgtcttttttgggatctgctata------tgtcatgtctgtt----------acgga |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| | ||| |
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| T |
1758 |
acttggaatcctagagaatgtcttaatagaagatgaagccgactgtcttttttgg-atctgctataggcatctgtcatgtctgttttcagctgttatgga |
1660 |
T |
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| Q |
104 |
tggggtttttagcgcagcagttctgtttatagggaggggtttctgtgcttaggtgttttattggttttgcat--gtttcatgccattgtacaactgctgt |
201 |
Q |
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||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| |||||| ||||||| |
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| T |
1659 |
tggagttttttgcgcagcagttctgtttatagggaggggtttccgtgcttaggtgtttttttggttttgcatatgtttcatgccaatgtacagctgctgt |
1560 |
T |
|
| Q |
202 |
gctgattgttttgtccattgtaacaatctgccttttgcacatcttgtgctaggctcttttctatatttaatatgctgattc |
282 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
1559 |
gctgattgttttgtccattgtaataatctgccttttgcacatcttgtgctaggctcttttctatatataatatgctaattc |
1479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 130 - 282
Target Start/End: Original strand, 50481155 - 50481309
Alignment:
| Q |
130 |
ttatagggaggggtttctgtgcttaggtgttttattggttttgcat--gtttcatgccattgtacaactgctgtgctgattgttttgtccattgtaacaa |
227 |
Q |
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||||| ||||| ||||||||||||||||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
50481155 |
ttataaggaggagtttctgtgcttaggtgtttttttggttttgcatatgtttcatgccaatgtacagctgctgtgctgattgttttgtccattgtaacaa |
50481254 |
T |
|
| Q |
228 |
tctgccttttgcacatcttgtgctaggctcttttctatatttaatatgctgattc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50481255 |
tctgccttttgcacatcttgtgctaggctcttttctatatataatatgctgattc |
50481309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 33858690 - 33858654
Alignment:
| Q |
20 |
acttggaatcctagagaatgtcttaatagaagatgaa |
56 |
Q |
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|||||||||||| |||||||||| ||||||||||||| |
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| T |
33858690 |
acttggaatcctcgagaatgtctaaatagaagatgaa |
33858654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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