View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3447_low_40 (Length: 221)

Name: NF3447_low_40
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3447_low_40
NF3447_low_40
[»] chr7 (2 HSPs)
chr7 (5-186)||(8421220-8421401)
chr7 (14-67)||(42793591-42793644)
[»] chr3 (3 HSPs)
chr3 (14-73)||(7346801-7346860)
chr3 (18-73)||(52716146-52716201)
chr3 (18-73)||(52716918-52716973)
[»] chr8 (1 HSPs)
chr8 (18-73)||(14913539-14913594)


Alignment Details
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 8421220 - 8421401
Alignment:
Q  5 tacaactttgtctctgctgttaagtgacctctaacggagctgacatgacactgacatgtcattatttaaatt-nnnnnnnnntcagaatttctgtttaat 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||||||||||||||    
T  8421220 tacagctttgtctctgctgttaagtgacctctaacggagctgacatggcactgacatgtcattatttaaattaaaaaaaaaatcagaatttctgtttaat 8421319  T
Q  104 ggttttttgcnnnnnnnnnnnnntgatgggaaattatgaatctactaaagtaccccaattttcaaaaggcatcaattaagcaa 186  Q
    ||||||||||             ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  8421320 ggttttttgc-aaaaaaaaaaaatgatgggaaattatgaaactactaaagtaccccaattttcagaaggcatcaattaagcaa 8421401  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 42793644 - 42793591
Alignment:
Q  14 gtctctgctgttaagtgacctctaacggagctgacatgacactgacatgtcatt 67  Q
    ||||||||||||||||||||||||||||  ||||| ||||||| ||| ||||||    
T  42793644 gtctctgctgttaagtgacctctaacggcactgacgtgacacttacacgtcatt 42793591  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 7346801 - 7346860
Alignment:
Q  14 gtctctgctgttaagtgacctctaacggagctgacatgacactgacatgtcattatttaa 73  Q
    |||||||||||||| ||||||||||||| |||||| || |||| |||| |||||||||||    
T  7346801 gtctctgctgttaaatgacctctaacggtgctgacgtggcactaacatatcattatttaa 7346860  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 52716146 - 52716201
Alignment:
Q  18 ctgctgttaagtgacctctaacggagctgacatgacactgacatgtcattatttaa 73  Q
    |||||||||| ||||| ||||||| |||||| || |||||||||||||||||||||    
T  52716146 ctgctgttaaatgacccctaacggcgctgacgtggcactgacatgtcattatttaa 52716201  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 52716973 - 52716918
Alignment:
Q  18 ctgctgttaagtgacctctaacggagctgacatgacactgacatgtcattatttaa 73  Q
    |||||||||| ||||||||||||| |||||  || ||||||||| |||||||||||    
T  52716973 ctgctgttaaatgacctctaacggcgctgatgtggcactgacatatcattatttaa 52716918  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 14913539 - 14913594
Alignment:
Q  18 ctgctgttaagtgacctctaacggagctgacatgacactgacatgtcattatttaa 73  Q
    |||||||||| ||||||||||||| |||||| || ||||||||| | |||||||||    
T  14913539 ctgctgttaaatgacctctaacggcgctgacgtggcactgacatattattatttaa 14913594  T

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