View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_low_43 (Length: 217)
Name: NF3447_low_43
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_low_43 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 8691426 - 8691642
Alignment:
| Q |
1 |
ttgaaggaattcctgatgtaaggatttcattcttgataaatgacaatagaaattttgaaaacaaagttttaattttaaacctttcttacatgaaacatac |
100 |
Q |
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| T |
8691426 |
ttgaaggaattcctgatgtaaggatttcattcttgataaatgacaatagaaattttgaaaacaaagttttaattttaaacctttcttacatgaaacatac |
8691525 |
T |
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| Q |
101 |
ttagaagttagaacttagacttgtttgttatttgtttcaggtaataagtggtaccttgcttgaaaagaatatggaaccaatgtttcaggaacctcatcag |
200 |
Q |
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| T |
8691526 |
ttagaagttagaacttagacttgtttgttatttgtttcaggtaataagtggtaccttgcttgaaaagaatatggaaccaatgtttcaggaacctcatcag |
8691625 |
T |
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| Q |
201 |
gccgaaaattactttcc |
217 |
Q |
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| T |
8691626 |
gccgaaaattactttcc |
8691642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 8706089 - 8706184
Alignment:
| Q |
1 |
ttgaaggaattcctgatgtaaggatttcattcttgataaatgacaatagaaattttgaaaacaaagttttaattttaaacctttcttacatgaaacat |
98 |
Q |
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| T |
8706089 |
ttgaaggaattcctgatgtaaggagttcatccttgataaatga-tatagaaattttgagaacaaagttttggatttaagcctttc-tacatgaaacat |
8706184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 8724958 - 8725042
Alignment:
| Q |
110 |
agaacttagacttgtttgttatttgtttcaggtaataagtggtaccttgcttgaaaagaatatggaaccaatgtttcaggaacct |
194 |
Q |
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| T |
8724958 |
agaacttatacttgttttatatttgtttcaggttttaagtggtactttgccagaaataaatatgcaatcaatatttgaggaacct |
8725042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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