View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3447_low_5 (Length: 540)
Name: NF3447_low_5
Description: NF3447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3447_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 23 - 540
Target Start/End: Complemental strand, 13148909 - 13148378
Alignment:
| Q |
23 |
cagtttgatgttgagaggagagaccaggacacaagaatcagtatctgctgtgccacaaagccaggattgttactgtcaacagtgaacacattagaagcat |
122 |
Q |
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| T |
13148909 |
cagtttgatgttgagaggagagaccaggacacaagaatcagtatctgctgtgccacaaagccaggattgttactgtcaacagtgaacacattagaagcat |
13148810 |
T |
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| Q |
123 |
taggccttgagattcatcagtgtgttataagcagtttcaatgatttttcattgcaagcatcttgctcagaggttcataaattat-----attactgcatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
13148809 |
taggccttgagattcatcagtgtgttataagcagtttcaatgatttttcattgcaagcatcttgctcagaggttagtaaattatattatattactgcatg |
13148710 |
T |
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| Q |
218 |
ttcagattgatagcgaatttggcagaattacattgtgtcaccgtcattttact----actacgcttttgagctttaagtataagtttggatgtttgcgag |
313 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13148709 |
ttcggattgatagcgaatttggcagaattacattgtgtcaccatcattttactaaaaactacgcttttgagctttaagtatatgtttggatgtttgcgag |
13148610 |
T |
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| Q |
314 |
aagaattgtttttgtctttaaattcgattctaatttgaagttagaatttagggcttttttctctacaattgaattttcgtctggaatttatcacattcaa |
413 |
Q |
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| T |
13148609 |
aagaattgtttttgtcttcaaaatcgattctaaattgaagttagaatttagggcttttttctctacaattgatttttcgtctggaatttatcacattcaa |
13148510 |
T |
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| Q |
414 |
ttcaattttagtccgtaacaattttctagaatcaatttttgtgactccag-----accnnnnnnnnnngactatttgcctcaataattgtttgcatggtt |
508 |
Q |
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| T |
13148509 |
ttcaattttagtccgtaacaattttctagaatcaatttttgtgactgcagaacaaaacaaaaaaaaaagactatttgcctcaataattgtttgcatggtt |
13148410 |
T |
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| Q |
509 |
aaaataaaacatgttcttacttcttttaacat |
540 |
Q |
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| T |
13148409 |
aaaataaaacatgttcttacttcttttaacat |
13148378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 24 - 295
Target Start/End: Original strand, 29010012 - 29010283
Alignment:
| Q |
24 |
agtttgatgttgagaggagagaccaggacacaagaatcagtatctgctgtgccacaaagccaggattgttactgtcaacagtgaacacattagaagcatt |
123 |
Q |
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| T |
29010012 |
agtttgatgttgagag---agagcaggacacaagaatcagtatctgctgtgccacaaagccaggattgttactgtcaacagtgaacacattagaagcatt |
29010108 |
T |
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| Q |
124 |
aggccttgagattcatcagtgtgttataagcagtttcaatgatttttcattgcaagcatcttgctcagaggttcataaattatattactgcatgttcaga |
223 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||| || |
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| T |
29010109 |
aggccttgagattcaccagtgtgttataagcagtttcaatgatttttcattgcaagcatcttgctcagaggtt-agtaattgtattactgcatgttcgga |
29010207 |
T |
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| Q |
224 |
ttgatagcgaatttggcagaattacattgtgtcaccgtcattttact----actacgcttttgagctttaagtata |
295 |
Q |
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| T |
29010208 |
tggatatcgaatttggcagaattacactgtgtcactgtcattttactaaaaactatgctattgagctttaagtata |
29010283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 52002617 - 52002502
Alignment:
| Q |
80 |
aagccaggattgttactgtcaacagtgaacacattagaagcattaggccttgagattcatcagtgtgttataagcagtttcaatgatttttcattgcaag |
179 |
Q |
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|||||||| ||||| || || ||||| |||||||| ||||||||||||||||||||||| || |||||||| ||| ||||||||||||| || |||| | |
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| T |
52002617 |
aagccagggttgttgctatccacagtaaacacattggaagcattaggccttgagattcaacaatgtgttattagctgtttcaatgatttcacaatgcagg |
52002518 |
T |
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| Q |
180 |
catcttgctcagaggt |
195 |
Q |
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| T |
52002517 |
cttcttgctcagaggt |
52002502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 25901598 - 25901480
Alignment:
| Q |
80 |
aagccaggattgttactgtcaacagtgaacacattagaagcat---taggccttgagattcatcagtgtgttataagcagtttcaatgatttttcattgc |
176 |
Q |
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|||||||| ||||| | || ||||| |||||||| ||||||| |||||||||||||||| || | |||||| ||| ||||||||||||| || ||| |
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| T |
25901598 |
aagccagggttgttgatatccacagtaaacacattggaagcatcattaggccttgagattcaacaatatgttattagctgtttcaatgatttcacaatgc |
25901499 |
T |
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| Q |
177 |
aagcatcttgctcagaggt |
195 |
Q |
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| T |
25901498 |
aggcttcttgctcagaggt |
25901480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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