View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3448_high_12 (Length: 250)
Name: NF3448_high_12
Description: NF3448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3448_high_12 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 39327473 - 39327710
Alignment:
| Q |
13 |
aatataggctaattaatttgtttaaggttataattgaaataacgaaaaaatccagccccaaatcccatatcctctttatgtattgttatagatgttaggt |
112 |
Q |
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| T |
39327473 |
aatataggctaattaatttgtttaagggaataattgaaataacaaaaaaatccagccccaaatcccatatcctctttatatattgttatagatgttaggt |
39327572 |
T |
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| Q |
113 |
tataatttttatttgttgagtgtttctctttctataatgtgaattcttcatttggttttgataatgtacatacaaggactaccatgaagaaagaaaatta |
212 |
Q |
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| T |
39327573 |
tataatttttatttgttgagtgtttctctttctataatgtgaattcttcatttggttttgataatgtacatacagggactaccatgaagaaagaaaatta |
39327672 |
T |
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| Q |
213 |
tctttatcttgaggatgcttcatccattaggtgctatc |
250 |
Q |
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| T |
39327673 |
tctttatcttgaggatgcttcatccattaggtgctatc |
39327710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 119 - 248
Target Start/End: Original strand, 39418747 - 39418876
Alignment:
| Q |
119 |
ttttatttgttgagtgtttctctttctataatgtgaattcttcatttggttttgataatg-tacatacaaggactaccatgaagaaagaaaattatcttt |
217 |
Q |
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| T |
39418747 |
ttttatttgttgagtgtttctctttctataatgtgaattattcatttggtttggttgctgatgcatacaaggactaccgcgaagaaagaaatttatcttt |
39418846 |
T |
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| Q |
218 |
atcttgaggatgcttcatccattaggtgcta |
248 |
Q |
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| T |
39418847 |
gtc-tgaggatgcttcatccattaggtgcta |
39418876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 38004380 - 38004317
Alignment:
| Q |
27 |
aatttgtttaaggttataattgaaataacgaaaaaatccagccccaaatcccatatcctctttat |
91 |
Q |
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| T |
38004380 |
aatttgttcaagggtataattgaaataac-aaaaaattcagcccaaaatctcatattctctttat |
38004317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 27175170 - 27175119
Alignment:
| Q |
30 |
ttgtttaaggttataattgaaataacgaaaaaatccagccccaaatcccatat |
82 |
Q |
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| T |
27175170 |
ttgtttaatggtataattggaataac-aaaaaatccagcccaaaatcccatat |
27175119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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