View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3448_high_17 (Length: 212)

Name: NF3448_high_17
Description: NF3448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3448_high_17
NF3448_high_17
[»] chr1 (17 HSPs)
chr1 (11-212)||(13244271-13244472)
chr1 (12-212)||(13271827-13272027)
chr1 (27-147)||(12963677-12963797)
chr1 (12-212)||(13086348-13086548)
chr1 (39-161)||(13007489-13007611)
chr1 (27-212)||(13080631-13080816)
chr1 (12-212)||(19278919-19279119)
chr1 (56-161)||(13204748-13204853)
chr1 (39-143)||(30367889-30367993)
chr1 (39-161)||(13069957-13070079)
chr1 (39-161)||(13101289-13101411)
chr1 (39-160)||(19727443-19727564)
chr1 (42-146)||(13064997-13065101)
chr1 (42-157)||(13161814-13161929)
chr1 (42-156)||(13130122-13130236)
chr1 (42-157)||(13094692-13094807)
chr1 (39-137)||(13214132-13214230)
[»] chr6 (1 HSPs)
chr6 (39-162)||(31396456-31396580)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 13244271 - 13244472
Alignment:
Q  11 cagagacactgcggtaaatctcttcggtgcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13244271 cagagacactgcggtaaatctcttcggtgcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattggggaa 13244370  T
Q  111 gcgaaaattattcaagagatcaaagataattgtctaacacaagaggagaatttgatcgataatttaaacgtggaaaagattgataagcttgtttaccttc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  13244371 gcgaaaattattcaagagatcaaagataattgtctaacacaagaggagaatttaatcaataatttaaacgtggaaaagattgataagcttgtttaccttc 13244470  T
Q  211 at 212  Q
    ||    
T  13244471 at 13244472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 13272027 - 13271827
Alignment:
Q  12 agagacactgcggtaaatctcttcggtgcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaag 111  Q
    |||||||||||  | | |||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13272027 agagacactgcattcactctcttggctgcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctaatgtggaag 13271928  T
Q  112 cgaaaattattcaagagatcaaagataattgtctaacacaagaggagaatttgatcgataatttaaacgtggaaaagattgataagcttgtttaccttca 211  Q
    | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||||  ||||||||||    
T  13271927 caaaacttattcaagagatcaaagatcattgtctaacacaagaggagaatttgatcaataatttaaatgttgaaaacattgataagctgatttaccttca 13271828  T
Q  212 t 212  Q
    |    
T  13271827 t 13271827  T

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Target: chr1; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 27 - 147
Target Start/End: Original strand, 12963677 - 12963797
Alignment:
Q  27 aatctcttcggtgcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaag 126  Q
    |||||||| | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  12963677 aatctcttagctgcaggaagtggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaaactaaaattattcaag 12963776  T
Q  127 agatcaaagataattgtctaa 147  Q
    |||| |||||||||| |||||    
T  12963777 agattaaagataattttctaa 12963797  T

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Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 13086548 - 13086348
Alignment:
Q  12 agagacactgcggtaaatctcttcggtgcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaag 111  Q
    |||||||||||  | |||||||| | |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||   || |||||||    
T  13086548 agagacactgcattcaatctcttagctgcaggaagtggaacagttagttcaggtctaagttggttctcttggcttgtttcaactcatttcatagtggaag 13086449  T
Q  112 cgaaaattattcaagagatcaaagataattgtctaacacaagaggagaatttgatcgataatttaaacgtggaaaagattgataagcttgtttaccttca 211  Q
    | ||||| ||||||||||| ||||||||||||||| |||| ||||| |||||| ||  ||||||||  || |||||| || |||| || || ||||||||    
T  13086448 ctaaaataattcaagagataaaagataattgtctatcacatgaggataatttggtcactaatttaagagttgaaaagcttaataaactagtgtaccttca 13086349  T
Q  212 t 212  Q
    |    
T  13086348 t 13086348  T

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Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 13007611 - 13007489
Alignment:
Q  39 gcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagata 138  Q
    ||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  13007611 gcaggaaatggcacaattagttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagaaatcaaagata 13007512  T
Q  139 attgtctaacacaagaggagaat 161  Q
    | || |  |||||||||||||||    
T  13007511 actggcccacacaagaggagaat 13007489  T

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Target: chr1; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 27 - 212
Target Start/End: Original strand, 13080631 - 13080816
Alignment:
Q  27 aatctcttcggtgcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaag 126  Q
    |||||||| | |||||||||||||||||||||| ||||||| | |||||| |||||||| |||||||| |||||||  || || |  |||||||||||||    
T  13080631 aatctcttggttgcaggaaatggaacaattagtacaggtctcacttggtttttttggctggtttcaacgcatcctagggtagatggtaaaattattcaag 13080730  T
Q  127 agatcaaagataattgtctaacacaagaggagaatttgatcgataatttaaacgtggaaaagattgataagcttgtttaccttcat 212  Q
    ||||||||||||||||| ||| ||| || |||||||| |||| |||||||   |||||| || |||||||||| ||||||||||||    
T  13080731 agatcaaagataattgtttaaaacacgatgagaattttatcgctaatttaggtgtggaagagcttgataagctagtttaccttcat 13080816  T

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Target: chr1; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 212
Target Start/End: Original strand, 19278919 - 19279119
Alignment:
Q  12 agagacactgcggtaaatctcttcggtgcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaag 111  Q
    |||||||||||  | |||||||| | |||||| ||||||||||||||||| ||||| | ||||||||||||||| || ||||||||||||||||| ||||    
T  19278919 agagacactgctctcaatctcttggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaag 19279018  T
Q  112 cgaaaattattcaagagatcaaagataattgtctaacacaagaggagaatttgatcgataatttaaacgtggaaaagattgataagcttgtttaccttca 211  Q
    | |||||||||||||||||||| | ||| ||| ||||| ||||||| |||||||||   ||||| |  ||| || || |||||||||| ||||| |||||    
T  19279019 caaaaattattcaagagatcaaggttaactgtttaacaaaagaggataatttgatcacaaattttagtgtgaaagagcttgataagctagtttatcttca 19279118  T
Q  212 t 212  Q
    |    
T  19279119 t 19279119  T

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Target: chr1; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 13204853 - 13204748
Alignment:
Q  56 tagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataattgtctaacacaagag 155  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||  |||||||||    
T  13204853 tagttcaggtctaagttggtttttttggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagag 13204754  T
Q  156 gagaat 161  Q
    ||||||    
T  13204753 gagaat 13204748  T

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Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 30367889 - 30367993
Alignment:
Q  39 gcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagata 138  Q
    ||||| ||||| ||| |||||||| |||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30367889 gcaggtaatggcacacttagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagata 30367988  T
Q  139 attgt 143  Q
    |||||    
T  30367989 attgt 30367993  T

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Target: chr1; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 13069957 - 13070079
Alignment:
Q  39 gcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagata 138  Q
    ||||||||||| ||| ||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||    
T  13069957 gcaggaaatggcacagttacttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagaaataaaagata 13070056  T
Q  139 attgtctaacacaagaggagaat 161  Q
    | || |  |||||||||||||||    
T  13070057 actggcccacacaagaggagaat 13070079  T

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Target: chr1; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 13101411 - 13101289
Alignment:
Q  39 gcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagata 138  Q
    |||||||||||  || ||||||||| ||| |||||||| || ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||    
T  13101411 gcaggaaatggcccagttagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagata 13101312  T
Q  139 attgtctaacacaagaggagaat 161  Q
    | ||||  |||||||||||||||    
T  13101311 actgtcctacacaagaggagaat 13101289  T

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Target: chr1; HSP #12
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 19727564 - 19727443
Alignment:
Q  39 gcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagata 138  Q
    |||||||||||  || ||||| ||||||| |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||    
T  19727564 gcaggaaatggcccagttagtacaggtctcagttggtttttttggcttgtttcgactcatcctattgtcgaagccaaaattattcaagaaatcaaagata 19727465  T
Q  139 attgtctaacacaagaggagaa 160  Q
    | || |  ||||||||||||||    
T  19727464 actggcccacacaagaggagaa 19727443  T

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Target: chr1; HSP #13
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 13064997 - 13065101
Alignment:
Q  42 ggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataatt 141  Q
    ||||| || ||| ||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||| || |||||||||||||| ||||||||||    
T  13064997 ggaaacggcacagttagttcaggtctcagttggttcttttggcttgtttcatgtcatcctgttgtggaagccaagattattcaagagatgaaagataatt 13065096  T
Q  142 gtcta 146  Q
    |||||    
T  13065097 gtcta 13065101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 13161929 - 13161814
Alignment:
Q  42 ggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataatt 141  Q
    ||||||||  |||||||||||| ||| |||||||| || |||||  |||||||| |||||||||||||||  ||||| ||||||||||||||||||||||    
T  13161929 ggaaatggttcaattagttcagctctcagttggtttttctggctcctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 13161830  T
Q  142 gtctaacacaagagga 157  Q
    | ||||||||||||||    
T  13161829 ggctaacacaagagga 13161814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 42 - 156
Target Start/End: Complemental strand, 13130236 - 13130122
Alignment:
Q  42 ggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataatt 141  Q
    ||||||||  |||||||||||| ||| |||||||| || |||||| |||||||| |||||||||||||||  ||||| ||||||||||||||||||||||    
T  13130236 ggaaatggttcaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 13130137  T
Q  142 gtctaacacaagagg 156  Q
    |  ||||||||||||    
T  13130136 ggttaacacaagagg 13130122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 42 - 157
Target Start/End: Complemental strand, 13094807 - 13094692
Alignment:
Q  42 ggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataatt 141  Q
    |||||||| ||||||||||||| ||| |||||||| || |||||| |||||||| |||||||||||||||  ||||| ||||||||||||| ||||||||    
T  13094807 ggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcagagataatt 13094708  T
Q  142 gtctaacacaagagga 157  Q
    |  |||||| ||||||    
T  13094707 ggttaacacgagagga 13094692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 13214230 - 13214132
Alignment:
Q  39 gcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagat 137  Q
    |||||||||||  || || |||||||||| | |||||| || ||||||||||||||||||| |||||||||||| |||||||||||||| || ||||||    
T  13214230 gcaggaaatggcccagttcgttcaggtctcatttggtttttctggcttgtttcaactcatcttattgtggaagctaaaattattcaagaaataaaagat 13214132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 39 - 162
Target Start/End: Original strand, 31396456 - 31396580
Alignment:
Q  39 gcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgttt-caactcatcctattgtggaagcgaaaattattcaagagatcaaagat 137  Q
    ||||||||||| |||||||||||| ||||  ||||||| || |||||||||| |||||||||||| ||||||||| |||||||||||||||||  |||||    
T  31396456 gcaggaaatggcacaattagttcaagtctcggttggtttttctggcttgttttcaactcatcctaatgtggaagccaaaattattcaagagattcaagat 31396555  T
Q  138 aattgtctaacacaagaggagaatt 162  Q
    || |||| ||| ||| | |||||||    
T  31396556 aactgtcaaacccaacatgagaatt 31396580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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