View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3448_high_4 (Length: 356)
Name: NF3448_high_4
Description: NF3448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3448_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 8437544 - 8437894
Alignment:
| Q |
1 |
caaggaaatatattgccagtaaacaaaaaagataaggatatatctttcgaaaaatgaaatcagtgagacaaatccttaacnnnnnnnnnnnnnnnnnnnn |
100 |
Q |
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| T |
8437544 |
caaggaaatatattgccagtaaacaaaaaagataaggatatatctttcgaaaaatgaaatcagtgagacaaatccttaactatatatctcacaaaaatat |
8437643 |
T |
|
| Q |
101 |
gtttatgatcaatacaaacatgaacaagcaattgatttgattt------aataagtaacacgaactccttggtacctgagaatttcaccaatgagttcac |
194 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437644 |
gtttatgatcaatacacacatgaacaagcaattgatttgatttgattttaataagtaacacgaactccttggtacctgagaatttcaccaatgagttcac |
8437743 |
T |
|
| Q |
195 |
ctttccctgaaccaacatacctaccagcaatcttaccatctctaatgaacaaaaaagtaggaacctgaacaacttccatgtccctcaaaaactgcataca |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437744 |
ctttccctgaaccaacatacctaccagcaatcttaccatctctaatgaacaaaaaagtaggaacctgaacaacttccatgtccctcaaaaactgcataca |
8437843 |
T |
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| Q |
295 |
actatcattctcatcaccattcatccttgcaaaaataacagtatcattcat |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437844 |
actatcattctcatcaccattcatccttgcaaaaataacagtatcattcat |
8437894 |
T |
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