View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3448_high_6 (Length: 336)
Name: NF3448_high_6
Description: NF3448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3448_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 326
Target Start/End: Complemental strand, 14513868 - 14513558
Alignment:
| Q |
16 |
tctattactctttccacttccattacttccaagttgcaattctgaaacacaaggcattgtttcatttttgtcatcaactccttgatcatagagaaaccct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14513868 |
tctattactctttccacttccattacttccaagttgcaattctgaaacacaaggcattgtttcatttttgtcatcaactccttgatcatagagaaaccct |
14513769 |
T |
|
| Q |
116 |
ttgaatacatggccactaatattcacagtggccaagtaagcaagttcatcttccccattgccaatagcagatactctatggcacttgaaaacagcaggcg |
215 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14513768 |
ttaaatacatggccactaatattcacagtggccaagtaagcaagttcatcttcaccattgccaatagcagaaactctatggcacttgaaaacagcaggcg |
14513669 |
T |
|
| Q |
216 |
tgcgaacatagcgcggcaaagtctgcttgaaaccaggatctgcaattcaaaaacaaacatgagaacacacgatgtttaatcagagttcaaccaattgtgt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14513668 |
cgcgaacatagcgcggcaaagtctgcttgaaaccaggatctgcaattcagaaacaaacatgagaacacacgatgtttaatcagagttcaaccaattgtgt |
14513569 |
T |
|
| Q |
316 |
ctacctctctg |
326 |
Q |
| |
|
||||||||||| |
|
|
| T |
14513568 |
ctacctctctg |
14513558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 4201992 - 4202173
Alignment:
| Q |
26 |
tttccacttccattacttccaagttgcaattctgaaacacaaggcattgtttcatttttgtcatcaactccttgatcatagagaaaccctttgaatacat |
125 |
Q |
| |
|
|||||||| | |||| |||| | ||| | |||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
4201992 |
tttccactacaattatttcccaattgaagttctgaaacacaaggcattgg---atttttcccatcaacaccatgatcatagagaaaccctttgaaaacat |
4202088 |
T |
|
| Q |
126 |
ggccactaatattcacagtggccaagtaagcaagttcatcttccccattgccaatagcagatactctatggcacttgaaaacagc |
210 |
Q |
| |
|
|||||||||||| || |||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| |||| ||||| |
|
|
| T |
4202089 |
ggccactaatatgaactgtggccaagtaagcaaattcatcttcaccattgccaatagcagttactctatggcacctgaatacagc |
4202173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University