View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3448_low_10 (Length: 282)
Name: NF3448_low_10
Description: NF3448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3448_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 35 - 282
Target Start/End: Original strand, 8437313 - 8437544
Alignment:
| Q |
35 |
aagtaatattaaacaaatatggtttttcatggtcagctcttggattattcactagcttattttaatttcctcttaattatttgcattgatacaattctag |
134 |
Q |
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| T |
8437313 |
aagtaatattaaacaaatatggtttttcatggtcagctcttggattagtcactagcttcttttaatttcctctta----tttgcattgatacaattctag |
8437408 |
T |
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| Q |
135 |
ttaagtttgatcttgtcaaaatgaaaatataaacatgtacacactataataagcnnnnnnntaactttttacattagttataacttagtgaagtgtgtgg |
234 |
Q |
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| T |
8437409 |
ttaagtttgatcttgtcaaaatgaaaatataaacatgtacacactataataagc-aaaaaataactttttaca-----------ttagtgaagtgtgtgg |
8437496 |
T |
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| Q |
235 |
agggcagagggcgtatgctgaaacgtgtaacagtttagttttgttctc |
282 |
Q |
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| T |
8437497 |
agggcagagggcgtatgctgaaacgtgtaacagtttagttttgttctc |
8437544 |
T |
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