View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3448_low_11 (Length: 276)
Name: NF3448_low_11
Description: NF3448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3448_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 28187735 - 28187946
Alignment:
| Q |
23 |
acttcttgtatcatcctatgacaatcctcatgatgtgtccacatatgcatgaatttgaattgagaggaaaaactatgtgtggaattttcaaactcaagta |
122 |
Q |
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| T |
28187735 |
acttcttgtatcaccctgtgacaatctttatgatgggtccacaattgcatgaatttaaattgggaagtaaaactatgagtagaattatcaaattcaagta |
28187834 |
T |
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| Q |
123 |
ataaaggaaaatgatcagacttgtgctttaccattgtggacacatttagagagttgcaagcatctagccaatcttgattacaaatcactctatccaatct |
222 |
Q |
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| T |
28187835 |
atagtggaaagtgatccgacttgtgctttaccagtgttgacacattcagagagttgcaaacatccagccagttttgattacaaatcactctatccaatct |
28187934 |
T |
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| Q |
223 |
tctttaagtgtg |
234 |
Q |
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| T |
28187935 |
tctttcagtgtg |
28187946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 14720189 - 14720112
Alignment:
| Q |
3 |
caacgatattggtattcgaaacttcttgtatcatcctatgacaatcctcatgatgtgtccacatatgcatgaatttga |
80 |
Q |
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| T |
14720189 |
caacgatattggtattccaatcttcttgtatcatcctatgacaatcctcatgatgtgtgcacatatgcatgaatttga |
14720112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 7572491 - 7572280
Alignment:
| Q |
23 |
acttcttgtatcatcctatgacaatcctcatgatgtgtccacatatgcatgaatttgaattgagaggaaaaactatgtgtggaattttcaaactcaagta |
122 |
Q |
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| T |
7572491 |
acttcttgtatcaccctgcgacaatctttatggtgggtccacatttgcataaatttaaattgggaagcaaaactatgagaagaattatcaaattcaagta |
7572392 |
T |
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| Q |
123 |
ataaaggaaaatgatcagacttgtgctttaccattgtggacacatttagagagttgcaagcatctagccaatcttgattacaaatcactctatccaatct |
222 |
Q |
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| T |
7572391 |
acagtggaaagtgatcagacttatgctttaccagtgttgacacattcagagaattgcagacatccagccggtgttgattaaaaataactctatccaatct |
7572292 |
T |
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| Q |
223 |
tctttaagtgtg |
234 |
Q |
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| T |
7572291 |
tctttcagtgtg |
7572280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 10009703 - 10009597
Alignment:
| Q |
44 |
caatcctcatgatgtgtccacatatgcatgaatttgaattgagaggaaaaactatgtgtggaattttcaaactcaagtaataaaggaaaatgatcagact |
143 |
Q |
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| T |
10009703 |
caatcttcatgatgaatccacatttgcataaacttaaattgcgacaaaaaactatgatgagaagtttcaaactcaactaaaagaggaaaatgatctgact |
10009604 |
T |
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| Q |
144 |
tgtgctt |
150 |
Q |
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||||||| |
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| T |
10009603 |
tgtgctt |
10009597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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