View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3448_low_13 (Length: 237)
Name: NF3448_low_13
Description: NF3448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3448_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11743698 - 11743482
Alignment:
| Q |
1 |
attatatcctacgtccaaacaattatactcactcttacaccctacaaatatttgaggcccccataaattagagacctaactctataaaacttgatgcaca |
100 |
Q |
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| T |
11743698 |
attatatcctacatccaaacaattatactc----ttacgccctacaaatatttgaggcccccataaattagagacgtaactctatagaacttgatgcaca |
11743603 |
T |
|
| Q |
101 |
tgctcaagaacgacccatacaagactctacatgcatttaatgtgatattgtcaaattgagattggttattagatctatgacgtatgctctcaaccactag |
200 |
Q |
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| T |
11743602 |
tgctcaagaacggcccatacaagactctatatgcatttaatttgatattgtcaaattcagattggttattagatctatcgcgtatgctctcaaccactag |
11743503 |
T |
|
| Q |
201 |
ctaccaatctagcttaatatg |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
11743502 |
ctaccaatctagcttaatatg |
11743482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 11049714 - 11049686
Alignment:
| Q |
40 |
ccctacaaatatttgaggcccccataaat |
68 |
Q |
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| T |
11049714 |
ccctacaaatatttgaggcccccataaat |
11049686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 82
Target Start/End: Complemental strand, 18679436 - 18679394
Alignment:
| Q |
40 |
ccctacaaatatttgaggcccccataaattagagacctaactc |
82 |
Q |
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| T |
18679436 |
ccctacaaatatttgaggcccccataaattagaggtctaactc |
18679394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 36543962 - 36543921
Alignment:
| Q |
40 |
ccctacaaatatttgaggcccccataaattagagacctaact |
81 |
Q |
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| T |
36543962 |
ccctacaaatatttgaggctcccataaattggaggcctaact |
36543921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 36564361 - 36564402
Alignment:
| Q |
40 |
ccctacaaatatttgaggcccccataaattagagacctaact |
81 |
Q |
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||||||||||||||||||| |||||||||| ||| ||||||| |
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| T |
36564361 |
ccctacaaatatttgaggctcccataaattggaggcctaact |
36564402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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