View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3448_low_14 (Length: 236)
Name: NF3448_low_14
Description: NF3448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3448_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13244857 - 13245078
Alignment:
| Q |
1 |
cgcatgaagcacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaagtgtgatgcatgttgtgtctgtgttgttaacctttt |
100 |
Q |
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| T |
13244857 |
cgcatgaaacacggcttaaaggtcgaagtcagtaaaagatgcatttgatataacaaagttgtaagtgtgatgcatgttgtgtctgtgttgttaacctttt |
13244956 |
T |
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| Q |
101 |
tgttgctgtgtctgtcctagtaaaataatgttattgtcatttgtcaaattatactatttgtgttgctctctgtgttacaacaaacgaataaaatcctcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13244957 |
tgttgctgtgtctgtcctagtaaaataatgttattgtcatttgtcaaattatactatttgtgttgctctgtgtgttacaacaaacgaataaaatcctcaa |
13245056 |
T |
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| Q |
201 |
tgtttggaattgtgtatttgtt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
13245057 |
tgtttggaattgtgtatttgtt |
13245078 |
T |
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