View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3448_low_15 (Length: 232)

Name: NF3448_low_15
Description: NF3448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3448_low_15
NF3448_low_15
[»] chr4 (2 HSPs)
chr4 (79-216)||(26475090-26475227)
chr4 (80-204)||(32057380-32057505)
[»] chr3 (3 HSPs)
chr3 (82-204)||(12220921-12221043)
chr3 (80-195)||(7424639-7424752)
chr3 (80-167)||(24991712-24991799)
[»] scaffold0036 (2 HSPs)
scaffold0036 (79-194)||(64001-64115)
scaffold0036 (79-194)||(69143-69257)
[»] chr2 (2 HSPs)
chr2 (92-194)||(8520630-8520733)
chr2 (80-133)||(37831213-37831266)
[»] chr1 (5 HSPs)
chr1 (80-194)||(2660548-2660664)
chr1 (95-194)||(8133643-8133744)
chr1 (83-193)||(30655812-30655922)
chr1 (80-193)||(46167684-46167797)
chr1 (93-136)||(15840700-15840744)
[»] chr7 (1 HSPs)
chr7 (80-204)||(28006847-28006973)
[»] scaffold0236 (1 HSPs)
scaffold0236 (80-204)||(10103-10226)
[»] chr8 (1 HSPs)
chr8 (80-167)||(15075037-15075126)
[»] scaffold0171 (1 HSPs)
scaffold0171 (148-204)||(29185-29241)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 79 - 216
Target Start/End: Original strand, 26475090 - 26475227
Alignment:
Q  79 atgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtttagtttgtagg 178  Q
    |||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26475090 atgtgaatatcaggcgataggtgtttggattttgattctatggccattcacgatggagtgtgagtttgactcaacttttggtttatgtttagtttgtagg 26475189  T
Q  179 ggtttagcttggttttcgtgatgattcagtcttgaatg 216  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26475190 ggtttagcttggttttcgtgatgattcagtcttgaatg 26475227  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 32057380 - 32057505
Alignment:
Q  80 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgag--tttgactcaacttttggtttatgtttagtttgtag 177  Q
    |||||||||  ||| |||| |||||| ||||| |||  || | ||||||||||||||||||||  |||| ||||||||||||||||||||| |||||| |    
T  32057380 tgtgagtagtgggcaatagttgtttgaattttattttcgttgtcattcacgatggagtgtgaggttttgcctcaacttttggtttatgttt-gtttgttg 32057478  T
Q  178 gggtttagcttggttttcgtgatgatt 204  Q
    ||||||| ||| ||||| ||| |||||    
T  32057479 gggtttaacttagttttggtgttgatt 32057505  T

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Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 12220921 - 12221043
Alignment:
Q  82 tgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtttagtttgtaggggt 181  Q
    |||||||||| ||||| ||||||||||||||||| ||||| |||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  12220921 tgagtagcagacgatatgtgtttggattttgtttttgtggtcattcaagatggattgtgagcttgactcaacttttggtttatgtttagtttgtaggggt 12221020  T
Q  182 ttagcttggttttcgtgatgatt 204  Q
    ||||||||||||| ||| |||||    
T  12221021 ttagcttggttttggtgttgatt 12221043  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 80 - 195
Target Start/End: Complemental strand, 7424752 - 7424639
Alignment:
Q  80 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtttagtttgtaggg 179  Q
    |||||||||||| |||||||||||||||||| |||| ||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||||||| ||    
T  7424752 tgtgagtagcagacgataggtgtttggattt-gtttttgtggtcattcactatggagtgtgagcttgactcaacttttggtttatgattagtttgta-gg 7424655  T
Q  180 gtttagcttggttttc 195  Q
    ||||||||||||||||    
T  7424654 gtttagcttggttttc 7424639  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 24991799 - 24991712
Alignment:
Q  80 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtt 167  Q
    |||||| ||| | |||||||| |||||||||||||| |||| ||||||||| ||||| ||||  ||    ||||||||||||||||||    
T  24991799 tgtgagaagcggacgataggtatttggattttgtttttgtgcccattcacgttggagggtgatgttttggcaacttttggtttatgtt 24991712  T

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Target: scaffold0036 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 64115 - 64001
Alignment:
Q  79 atgtgagtagcag-gcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtttagtttgtag 177  Q
    ||||||||||| | |||||||| ||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||| || |||| ||     
T  64115 atgtgagtagccgcgcgataggcgtttggattttgtttctgtggtcattcgcgatggagtgtgtgcttgactcaacttttggtttatg-ttggtttata- 64018  T
Q  178 gggtttagcttggtttt 194  Q
    |||||||||||||||||    
T  64017 gggtttagcttggtttt 64001  T

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Target: scaffold0036; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 69257 - 69143
Alignment:
Q  79 atgtgagtagcag-gcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtttagtttgtag 177  Q
    ||||||||||| | |||||||| ||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||| || |||| ||     
T  69257 atgtgagtagccgcgcgataggcgtttggattttgtttctgtggtcattcgcgatggagtgtgtgcttgactcaacttttggtttatg-ttggtttata- 69160  T
Q  178 gggtttagcttggtttt 194  Q
    |||||||||||||||||    
T  69159 gggtttagcttggtttt 69143  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 8520630 - 8520733
Alignment:
Q  92 gcgataggtgtttggattttgtttctgtggccattcacgatggagtg-tgag-tttgactcaacttttggtttatgtttagtttgtaggggtttagcttg 189  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | |||| |||  |||||||||| ||||||||| | ||||  |||||||||||||    
T  8520630 gcgataggtgtttggattttgtttatgtggccattcacgatggagggatgagtttttgctcaacttttagtttatgttga-tttgagggggtttagcttg 8520728  T
Q  190 gtttt 194  Q
    |||||    
T  8520729 gtttt 8520733  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 37831213 - 37831266
Alignment:
Q  80 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatg 133  Q
    ||||||||||||||||||||||| | |||||||||  ||||||||||| |||||    
T  37831213 tgtgagtagcaggcgataggtgtgtagattttgttcttgtggccattcgcgatg 37831266  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 194
Target Start/End: Complemental strand, 2660664 - 2660548
Alignment:
Q  80 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtg--agtttgactcaacttttggtttatgtttagtttgtag 177  Q
    ||||||||| ||| |||  ||||||||||||||||| ||||||| ||||| ||||||||||  | |||| | ||||||||||||||||||   ||||| |    
T  2660664 tgtgagtagtaggtgatgagtgtttggattttgtttatgtggcccttcacaatggagtgtgaaattttggcgcaacttttggtttatgttggttttgtgg 2660565  T
Q  178 gggtttagcttggtttt 194  Q
    ||| |||||||| ||||    
T  2660564 gggattagcttgatttt 2660548  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 8133643 - 8133744
Alignment:
Q  95 ataggtgtttggattttgtttctgtggccattcacgatggag-tgtgag--tttgactcaacttttggtttatgtttagtttgtaggggtttagcttggt 191  Q
    ||||||||||| ||||||||| |||||||||||| |||| || ||||||  |||| |||||||||||||||||| || |||||| |||| ||| ||||||    
T  8133643 ataggtgtttgaattttgtttttgtggccattcatgatgaagttgtgaggttttggctcaacttttggtttatg-ttggtttgtgggggcttaacttggt 8133741  T
Q  192 ttt 194  Q
    |||    
T  8133742 ttt 8133744  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 30655812 - 30655922
Alignment:
Q  83 gagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgag--tttgactcaacttttggtttatgtttagtttgtagggg 180  Q
    |||||||| ||||||||||| |||||||||||||  ||||||||| | |||||  |||||  |||| |||||||| | |  |||||| | ||||||||||    
T  30655812 gagtagcaagcgataggtgtatggattttgtttccatggccattcccaatggacggtgaggttttggctcaacttct-gactatgttga-tttgtagggg 30655909  T
Q  181 tttagcttggttt 193  Q
    |||||||||||||    
T  30655910 tttagcttggttt 30655922  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 46167684 - 46167797
Alignment:
Q  80 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgag--tttgactcaacttttggtttatgtttagtttgtag 177  Q
    |||||| || || |||||||||||||  ||||||||  |||| |||| |||||||||||| ||  ||||| |||||||||||||||||||   ||||| |    
T  46167684 tgtgagaagtagtcgataggtgtttgatttttgttt--gtggtcatttacgatggagtgtaaggttttgaatcaacttttggtttatgttggttttgtgg 46167781  T
Q  178 gggtttagcttggttt 193  Q
    | ||||| ||||||||    
T  46167782 gtgtttatcttggttt 46167797  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 15840744 - 15840700
Alignment:
Q  93 cgataggtgtttggattttgttt-ctgtggccattcacgatggag 136  Q
    |||||| |||||||||||||||| |||||||||||||||||||||    
T  15840744 cgatagatgtttggattttgttttctgtggccattcacgatggag 15840700  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 28006847 - 28006973
Alignment:
Q  80 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgag--tttgactcaacttttggtttatgtttagtttgtag 177  Q
    |||||||||| || |||||||||||| ||||||||| |||||||||||| || ||||||| ||  |||| ||||  ||||||||||||||   |   |||    
T  28006847 tgtgagtagcgggtgataggtgtttgaattttgtttatgtggccattcatgagggagtgtaaggttttggctcacattttggtttatgttggttgcatag 28006946  T
Q  178 gggtttagcttggttttcgtgatgatt 204  Q
    | ||||| ||||||||||||| |||||    
T  28006947 gagtttaacttggttttcgtgttgatt 28006973  T

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Target: scaffold0236 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 10226 - 10103
Alignment:
Q  80 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgagtttgactcaacttttggtttatgtttagtttgtaggg 179  Q
    |||||||||  ||||| || |||||||||||||||| |||| ||||||||| | | ||| || |||  ||||||||||| |||||| || |||||| |||    
T  10226 tgtgagtagtgggcgacagatgtttggattttgtttatgtgcccattcacggttgggtgagattttagctcaacttttgatttatg-ttggtttgtgggg 10128  T
Q  180 gtttagcttggttttcgtgatgatt 204  Q
    ||||  | ||||||| ||| |||||    
T  10127 gttttacatggttttggtgttgatt 10103  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 15075126 - 15075037
Alignment:
Q  80 tgtgagtagcaggcgataggtgtttggattttgtttctgtggccattcacgatggagtgtgag--tttgactcaacttttggtttatgtt 167  Q
    |||||||||| | |||||| |||||| ||||||||| |||||  ||| ||||| |||||| ||  |||| || |||||||||||||||||    
T  15075126 tgtgagtagcggacgatagctgtttgaattttgtttatgtggttatttacgatagagtgtaaggttttggctgaacttttggtttatgtt 15075037  T

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Target: scaffold0171 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 29185 - 29241
Alignment:
Q  148 ctcaacttttggtttatgtttagtttgt-aggggtttagcttggttttcgtgatgatt 204  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||| ||| |||||    
T  29185 ctcaacttttggtttatg-ttagtttgtggggggtttagcttggttttggtgttgatt 29241  T

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