View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3448_low_16 (Length: 218)
Name: NF3448_low_16
Description: NF3448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3448_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 258969 - 258765
Alignment:
| Q |
1 |
acagttagttcatccacatcaattaccaagaacataattgatgggtatttctctgataactcgcaataatacggtgcaattatcttacaaggactacacc |
100 |
Q |
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| T |
258969 |
acagttagttcatccacatcaattaccaagaacataattgatgggtatttctctgataactcgcaataatacggtgcaattatcttacaaggactacacc |
258870 |
T |
|
| Q |
101 |
accttgcgctgaaatttgcaatgacctgttgaacatgaagctttagagctaattattgtacccaaataaaaagaaaaagaatgtgacataagatatatac |
200 |
Q |
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| T |
258869 |
accttgcgctgaaatttgcaatgacctgttgaacatgaagctttagagctaattattgtacccaaataaaaagaaaaagaatgtgacataagatatatac |
258770 |
T |
|
| Q |
201 |
tagaa |
205 |
Q |
| |
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||||| |
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| T |
258769 |
tagaa |
258765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 656952 - 657156
Alignment:
| Q |
1 |
acagttagttcatccacatcaattaccaagaacataattgatgggtatttctctgataactcgcaataatacggtgcaattatcttacaaggactacacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
656952 |
acagttagttcatccacatcaattaccaagaacataattgatgggtatttctctgataactcgcaataatacggtgcaattatcttacaaggactacacc |
657051 |
T |
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| Q |
101 |
accttgcgctgaaatttgcaatgacctgttgaacatgaagctttagagctaattattgtacccaaataaaaagaaaaagaatgtgacataagatatatac |
200 |
Q |
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| T |
657052 |
accttgcgctgaaatttgcaatgacctgttgaacatgaagctttagagctaattattgtacccaaataaaaagaaaaagaatgtgacataagatatatac |
657151 |
T |
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| Q |
201 |
tagaa |
205 |
Q |
| |
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||||| |
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|
| T |
657152 |
tagaa |
657156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 842687 - 842891
Alignment:
| Q |
1 |
acagttagttcatccacatcaattaccaagaacataattgatgggtatttctctgataactcgcaataatacggtgcaattatcttacaaggactacacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
842687 |
acagttagttcatccacatcaattaccaagaacataattgatgggtatttctctgataactcgcaataatacggtgcaattatcttacaaggactacacc |
842786 |
T |
|
| Q |
101 |
accttgcgctgaaatttgcaatgacctgttgaacatgaagctttagagctaattattgtacccaaataaaaagaaaaagaatgtgacataagatatatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
842787 |
accttgcgctgaaatttgcaatgacctgttgaacatgaagctttagagctaattattgtacccaaataaaaagaaaaagaatgtgacataagatatatac |
842886 |
T |
|
| Q |
201 |
tagaa |
205 |
Q |
| |
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||||| |
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|
| T |
842887 |
tagaa |
842891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 27547795 - 27547940
Alignment:
| Q |
1 |
acagttagttcatccacatcaattaccaagaacataattgatgggtatttctctgataactcgcaataatacggtgcaattatcttacaaggactacacc |
100 |
Q |
| |
|
|||||||||||||||||||||| | | |||||| || |||| ||||||||| || | ||||| ||||| || ||||| | ||| ||||| | |||| |
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| T |
27547795 |
acagttagttcatccacatcaaccaataggaacatcatagatgtgtatttctcagacatttcgcagtaatatggcgcaatcaccttgcaaggcccgcacc |
27547894 |
T |
|
| Q |
101 |
accttgcgctgaaatttgcaatgacctgttgaacatgaagctttag |
146 |
Q |
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|| ||||||||||||||| || |||||||||||| | |||||||| |
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| T |
27547895 |
acactgcgctgaaatttgcgatcacctgttgaacaaggagctttag |
27547940 |
T |
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