View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3448_low_17 (Length: 212)
Name: NF3448_low_17
Description: NF3448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3448_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 28187421 - 28187257
Alignment:
| Q |
17 |
agactaaccaaaatcaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatcacaa |
116 |
Q |
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| T |
28187421 |
agactaaccaaaatcaaaaacacctccaaactcgtaactaccctcatgaatggtgatgatatggtttacaaccctgaggaaatatcaagtctcattacta |
28187322 |
T |
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| Q |
117 |
atcactttaaaaatatttttgctactaacaatgttgtgcaggatttgcaagctaatcaattgata |
181 |
Q |
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| T |
28187321 |
accactttaaaaatatttttgttactaacaatgttgtgcaggatttgcaggttaatcaactgata |
28187257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 14720483 - 14720578
Alignment:
| Q |
17 |
agactaaccaaaatcaaaa-atacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcat |
111 |
Q |
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| T |
14720483 |
agactaaccaaaataaaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcat |
14720578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 19217038 - 19216890
Alignment:
| Q |
17 |
agactaaccaaaatcaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatcacaa |
116 |
Q |
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| T |
19217038 |
agactatccaaaatcagaaactcttctaaactcattaacagcctcatgaatggtgatgacatggttactgacccggaggaaatatcaagtctcattacaa |
19216939 |
T |
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| Q |
117 |
atcactttaaaaatatttttgctactaacaatgttgtgcaggatttgca |
165 |
Q |
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| T |
19216938 |
atcactttaaaaatattttttccactaacaatgttgtgcaggaattgca |
19216890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 7572807 - 7572971
Alignment:
| Q |
17 |
agactaaccaaaatcaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatcacaa |
116 |
Q |
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||||| |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||||||| |||| |
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| T |
7572807 |
agactgaccaaaatcaaaaacacctccaaactgataactaccctcatgaatgatgatgatatagtttatgaccctgaggaaatatcaagtctcattacaa |
7572906 |
T |
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| Q |
117 |
atcactttaaaaatatttttgctactaacaatgttgtgcaggatttgcaagctaatcaattgata |
181 |
Q |
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| T |
7572907 |
atcacttcaaaaatatttttgctactaacaatgttgtgcaggatttgtaggttaatcatttgata |
7572971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 22562032 - 22562183
Alignment:
| Q |
14 |
cacagactaaccaaaatcaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatca |
113 |
Q |
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|||||||| ||||||||||||| || ||||||||||||| || |||||||||||||||| | ||| || ||| | || |||| ||||||| ||||| |
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| T |
22562032 |
cacagactggccaaaatcaaaaacacatccaaactcataaatagcctcatgaatggtgataacatgattactgatctagaggaaatttcaagtcacatca |
22562131 |
T |
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| Q |
114 |
caaatcactttaaaaatatttttgctactaacaatgttgtgcaggatttgca |
165 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||| || ||||||| |
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| T |
22562132 |
caaatcacttcaaaaatatttttgctactaacattgttgtgaagaatttgca |
22562183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 146
Target Start/End: Original strand, 10010035 - 10010167
Alignment:
| Q |
14 |
cacagactaaccaaaatcaaaaatacctccaaactcataactaccctcatgaatggtgatgatatggtttatgacccggatcaaatatcaagtctcatca |
113 |
Q |
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|||| |||| ||||||||||||| || ||||||||||||| || |||||||| ||||||| | ||||||| ||| || | ||||||||||||| ||||| |
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| T |
10010035 |
cacaaactatccaaaatcaaaaacacttccaaactcataaatagcctcatgattggtgataacatggtttctgatccacaacaaatatcaagtcacatca |
10010134 |
T |
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| Q |
114 |
caaatcactttaaaaatatttttgctactaaca |
146 |
Q |
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| T |
10010135 |
cagatcattttaaaaatattttttcttctaaca |
10010167 |
T |
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